MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
25km JRA IAF test "5.1"
🏃 Latest submission: Run 15 is in progress (work/log/med.log updated 2026-10-19 16:34 AEDT). Model date reached: 1973-01-01 (15.0 model years complete).
Notebooks: ocean_stats, timeseries, Timeseries_daily_extreme_from_2D_fields, temp-salt-vs-depth-time
GitHub issue: ACCESS-NRI/access-om3-configs#1534
📋 Summary for the GitHub issue
### OM3 Monitor summary: `MC_25km_jra_iaf+wombatlite-test5.1-8f50b769`
*25km JRA IAF test "5.1"*
- **Latest submission:** 🏃 Run 15 is in progress (`work/log/med.log` updated 2026-10-19 16:34 AEDT).
- **Model date reached:** 1973-01-01 (15.0 model years complete)
- **Average throughput:** 6.71 SYPD
- **Truncations:** 10 in 1 of 15 output folders
| Where | Records | Output folders | Max speed (m/s) | Max CFL |
|---|---:|---|---:|---:|
| [65.2°W, 61.3°N](https://www.google.com/maps/place/61.34,-65.25/@61.34,-65.25,5z) | 9 | 000 | 32.6 | 2.22 |
| [65.6°W, 61.4°N](https://www.google.com/maps/place/61.43,-65.62/@61.43,-65.62,5z) | 1 | 000 | 8.1 | 0.55 |
**References**
1. Archive folder: `/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769`
2. Run directory: `/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite` (current or crashed run in `work/`)
3. Status page: https://chrisb13.github.io/access-om3-live/live/MC_25km_jra_iaf%2Bwombatlite-test5.1-8f50b769/
*Generated automatically by the [OM3 Monitor](https://chrisb13.github.io/access-om3-live/live/) on 2026-10-19 16:38 AEDT; it may contain errors, so check against the files above.*
Run directory: current or crashed run
Read from the payu control directory /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite.
Latest model date in work/log/med.log: 1973-11-18T00:00:00 (rate 6.86 ypd)
Check this on Gadi: the latest model date
# WHAT THIS DOES: prints the last 'Model Date' line of the current run's log. The page takes the
# latest model date, and the speed of the run (the 'rate', in simulated years per day), from this
# line.
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# grep keeps the lines that contain 'Model Date:'; tail -n 1 keeps only the last of them
grep 'Model Date:' "$R"/work/log/med.log | tail -n 1
Log files
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.err (last lines; modified 2026-10-19 13:30 AEDT)
(t_initf) Read in prof_inparm namelist from: drv_in
(t_initf) Using profile_disable= F
(t_initf) profile_timer= 4
(t_initf) profile_depth_limit= 4
(t_initf) profile_detail_limit= 2
(t_initf) profile_barrier= F
(t_initf) profile_outpe_num= 1
(t_initf) profile_outpe_stride= 0
(t_initf) profile_single_file= F
(t_initf) profile_global_stats= T
(t_initf) profile_ovhd_measurement= F
(t_initf) profile_add_detail= F
(t_initf) profile_papi_enable= F
WARNING from PE 0: set_diffusivity_init: SIMPLE_TKE_TO_KD can not be used reliably with USE_REGRIDDING.
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.out (last lines; modified 2026-10-19 16:34 AEDT)
max rss=896450560.0 MB
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/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/work/log/med.log (last lines; modified 2026-10-19 16:34 AEDT)
Model Date: 1973-11-04T00:00:00 wall clock = 2026-10-19T16:26:34 avg dt = 34.38 s/day, dt = 34.47 s/day, rate = 6.87 ypd
memory_write: model date = 1973-11-04T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-05T00:00:00 wall clock = 2026-10-19T16:27:09 avg dt = 34.38 s/day, dt = 34.31 s/day, rate = 6.90 ypd
memory_write: model date = 1973-11-05T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-06T00:00:00 wall clock = 2026-10-19T16:27:43 avg dt = 34.38 s/day, dt = 34.46 s/day, rate = 6.87 ypd
memory_write: model date = 1973-11-06T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-07T00:00:00 wall clock = 2026-10-19T16:28:17 avg dt = 34.38 s/day, dt = 34.19 s/day, rate = 6.92 ypd
memory_write: model date = 1973-11-07T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-08T00:00:00 wall clock = 2026-10-19T16:28:52 avg dt = 34.38 s/day, dt = 34.36 s/day, rate = 6.89 ypd
memory_write: model date = 1973-11-08T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-09T00:00:00 wall clock = 2026-10-19T16:29:26 avg dt = 34.38 s/day, dt = 34.25 s/day, rate = 6.91 ypd
memory_write: model date = 1973-11-09T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-10T00:00:00 wall clock = 2026-10-19T16:30:00 avg dt = 34.38 s/day, dt = 34.14 s/day, rate = 6.93 ypd
memory_write: model date = 1973-11-10T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-11T00:00:00 wall clock = 2026-10-19T16:30:35 avg dt = 34.38 s/day, dt = 34.37 s/day, rate = 6.89 ypd
memory_write: model date = 1973-11-11T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-12T00:00:00 wall clock = 2026-10-19T16:31:09 avg dt = 34.38 s/day, dt = 34.28 s/day, rate = 6.91 ypd
memory_write: model date = 1973-11-12T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-13T00:00:00 wall clock = 2026-10-19T16:31:43 avg dt = 34.38 s/day, dt = 33.81 s/day, rate = 7.00 ypd
memory_write: model date = 1973-11-13T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-14T00:00:00 wall clock = 2026-10-19T16:32:17 avg dt = 34.37 s/day, dt = 34.00 s/day, rate = 6.96 ypd
memory_write: model date = 1973-11-14T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-15T00:00:00 wall clock = 2026-10-19T16:32:51 avg dt = 34.37 s/day, dt = 34.06 s/day, rate = 6.95 ypd
memory_write: model date = 1973-11-15T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-16T00:00:00 wall clock = 2026-10-19T16:33:25 avg dt = 34.37 s/day, dt = 34.25 s/day, rate = 6.91 ypd
memory_write: model date = 1973-11-16T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-17T00:00:00 wall clock = 2026-10-19T16:33:59 avg dt = 34.37 s/day, dt = 34.02 s/day, rate = 6.96 ypd
memory_write: model date = 1973-11-17T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
Model Date: 1973-11-18T00:00:00 wall clock = 2026-10-19T16:34:33 avg dt = 34.37 s/day, dt = 34.52 s/day, rate = 6.86 ypd
memory_write: model date = 1973-11-18T00:00:00 memory = -0.00 MB (highwater) 854.92 MB (usage)
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf__c.o181548824 (last lines; modified 2026-10-19 14:24 AEDT)
1972.nc.0004 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0005 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0006 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0007 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0008 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0009 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0010 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0011 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0012 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0013 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0014 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0015 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0016 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0017 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0018 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0019 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0020 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0021 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0022 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0023 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0024 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0025 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0026 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0027 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0028 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0029 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0030 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0031 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0032 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0033 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0034 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0035 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0037 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0038 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0039 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0040 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0041 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0042 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0043 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0044 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0045 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0046 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0047 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0048 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0050 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0051 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0052 access-om3.mom6.2d.mlotst.1mon.max.1972.nc.0053
mpirun -n 4 /g/data/vk83/apps/spack/1.1/release/linux-x86_64_v3/mppnccombine-fast-2026.10.000-4uvd4g2y5aboty4icvvcttsax6z62zdq/bin/mppnccombine-fast -r -o access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0000 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0001 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0002 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0003 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0004 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0005 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0006 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0007 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0008 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0009 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0010 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0011 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0012 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0013 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0014 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0015 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0016 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0017 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0018 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0019 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0020 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0021 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0022 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0023 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0024 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0025 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0026 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0027 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0028 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0029 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0030 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0031 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0032 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0033 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0034 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0035 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0037 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0038 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0039 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0040 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0041 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0042 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0043 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0044 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0045 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0046 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0047 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0048 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0050 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0051 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0052 access-om3.mom6.2d.hfrainds.1mon.mean.1972.nc.0053
mpirun -n 4 /g/data/vk83/apps/spack/1.1/release/linux-x86_64_v3/mppnccombine-fast-2026.10.000-4uvd4g2y5aboty4icvvcttsax6z62zdq/bin/mppnccombine-fast -r -o access-om3.mom6.3d.o2.1mon.mean.1972.nc access-om3.mom6.3d.o2.1mon.mean.1972.nc.0000 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0001 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0002 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0003 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0004 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0005 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0006 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0007 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0008 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0009 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0010 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0011 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0012 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0013 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0014 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0015 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0016 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0017 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0018 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0019 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0020 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0021 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0022 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0023 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0024 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0025 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0026 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0027 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0028 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0029 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0030 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0031 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0032 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0033 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0034 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0035 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0037 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0038 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0039 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0040 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0041 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0042 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0043 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0044 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0045 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0046 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0047 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0048 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0050 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0051 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0052 access-om3.mom6.3d.o2.1mon.mean.1972.nc.0053
mpirun -n 4 /g/data/vk83/apps/spack/1.1/release/linux-x86_64_v3/mppnccombine-fast-2026.10.000-4uvd4g2y5aboty4icvvcttsax6z62zdq/bin/mppnccombine-fast -r -o access-om3.mom6.3d.phyfe.1mon.mean.1972.nc access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0000 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0001 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0002 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0003 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0004 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0005 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0006 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0007 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0008 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0009 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0010 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0011 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0012 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0013 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0014 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0015 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0016 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0017 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0018 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0019 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0020 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0021 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0022 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0023 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0024 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0025 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0026 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0027 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0028 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0029 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0030 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0031 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0032 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0033 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0034 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0035 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0037 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0038 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0039 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0040 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0041 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0042 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0043 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0044 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0045 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0046 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0047 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0048 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0050 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0051 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0052 access-om3.mom6.3d.phyfe.1mon.mean.1972.nc.0053
mpirun -n 4 /g/data/vk83/apps/spack/1.1/release/linux-x86_64_v3/mppnccombine-fast-2026.10.000-4uvd4g2y5aboty4icvvcttsax6z62zdq/bin/mppnccombine-fast -r -o access-om3.mom6.2d.tos.1day.mean.1972.nc access-om3.mom6.2d.tos.1day.mean.1972.nc.0000 access-om3.mom6.2d.tos.1day.mean.1972.nc.0001 access-om3.mom6.2d.tos.1day.mean.1972.nc.0002 access-om3.mom6.2d.tos.1day.mean.1972.nc.0003 access-om3.mom6.2d.tos.1day.mean.1972.nc.0004 access-om3.mom6.2d.tos.1day.mean.1972.nc.0005 access-om3.mom6.2d.tos.1day.mean.1972.nc.0006 access-om3.mom6.2d.tos.1day.mean.1972.nc.0007 access-om3.mom6.2d.tos.1day.mean.1972.nc.0008 access-om3.mom6.2d.tos.1day.mean.1972.nc.0009 access-om3.mom6.2d.tos.1day.mean.1972.nc.0010 access-om3.mom6.2d.tos.1day.mean.1972.nc.0011 access-om3.mom6.2d.tos.1day.mean.1972.nc.0012 access-om3.mom6.2d.tos.1day.mean.1972.nc.0013 access-om3.mom6.2d.tos.1day.mean.1972.nc.0014 access-om3.mom6.2d.tos.1day.mean.1972.nc.0015 access-om3.mom6.2d.tos.1day.mean.1972.nc.0016 access-om3.mom6.2d.tos.1day.mean.1972.nc.0017 access-om3.mom6.2d.tos.1day.mean.1972.nc.0018 access-om3.mom6.2d.tos.1day.mean.1972.nc.0019 access-om3.mom6.2d.tos.1day.mean.1972.nc.0020 access-om3.mom6.2d.tos.1day.mean.1972.nc.0021 access-om3.mom6.2d.tos.1day.mean.1972.nc.0022 access-om3.mom6.2d.tos.1day.mean.1972.nc.0023 access-om3.mom6.2d.tos.1day.mean.1972.nc.0024 access-om3.mom6.2d.tos.1day.mean.1972.nc.0025 access-om3.mom6.2d.tos.1day.mean.1972.nc.0026 access-om3.mom6.2d.tos.1day.mean.1972.nc.0027 access-om3.mom6.2d.tos.1day.mean.1972.nc.0028 access-om3.mom6.2d.tos.1day.mean.1972.nc.0029 access-om3.mom6.2d.tos.1day.mean.1972.nc.0030 access-om3.mom6.2d.tos.1day.mean.1972.nc.0031 access-om3.mom6.2d.tos.1day.mean.1972.nc.0032 access-om3.mom6.2d.tos.1day.mean.1972.nc.0033 access-om3.mom6.2d.tos.1day.mean.1972.nc.0034 access-om3.mom6.2d.tos.1day.mean.1972.nc.0035 access-om3.mom6.2d.tos.1day.mean.1972.nc.0037 access-om3.mom6.2d.tos.1day.mean.1972.nc.0038 access-om3.mom6.2d.tos.1day.mean.1972.nc.0039 access-om3.mom6.2d.tos.1day.mean.1972.nc.0040 access-om3.mom6.2d.tos.1day.mean.1972.nc.0041 access-om3.mom6.2d.tos.1day.mean.1972.nc.0042 access-om3.mom6.2d.tos.1day.mean.1972.nc.0043 access-om3.mom6.2d.tos.1day.mean.1972.nc.0044 access-om3.mom6.2d.tos.1day.mean.1972.nc.0045 access-om3.mom6.2d.tos.1day.mean.1972.nc.0046 access-om3.mom6.2d.tos.1day.mean.1972.nc.0047 access-om3.mom6.2d.tos.1day.mean.1972.nc.0048 access-om3.mom6.2d.tos.1day.mean.1972.nc.0050 access-om3.mom6.2d.tos.1day.mean.1972.nc.0051 access-om3.mom6.2d.tos.1day.mean.1972.nc.0052 access-om3.mom6.2d.tos.1day.mean.1972.nc.0053
mpirun -n 4 /g/data/vk83/apps/spack/1.1/release/linux-x86_64_v3/mppnccombine-fast-2026.10.000-4uvd4g2y5aboty4icvvcttsax6z62zdq/bin/mppnccombine-fast -r -o access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0000 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0001 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0002 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0003 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0004 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0005 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0006 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0007 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0008 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0009 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0010 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0011 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0012 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0013 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0014 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0015 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0016 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0017 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0018 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0019 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0020 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0021 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0022 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0023 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0024 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0025 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0026 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0027 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0028 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0029 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0030 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0031 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0032 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0033 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0034 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0035 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0037 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0038 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0039 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0040 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0041 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0042 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0043 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0044 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0045 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0046 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0047 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0048 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0050 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0051 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0052 access-om3.mom6.3d.Kv_u+z.1mon.mean.1972.nc.0053
payu: Found modules in /opt/Modules/v4.3.0
======================================================================================
Resource Usage on 2026-10-19 14:24:19:
Job Id: 181548824.gadi-pbs
Project: g40
Exit Status: 0
Service Units: 11.05
NCPUs Requested: 4 CPU Time Used: 03:06:16
Memory Requested: 30.0GB Memory Used: 30.0GB
Walltime Requested: 06:00:00 Walltime Used: 00:55:16
JobFS Requested: 10.0GB JobFS Used: 204.22KB
======================================================================================
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf__c.e181548824 (last lines; modified 2026-10-19 13:29 AEDT)
Loading access-om3/pr264-25
Loading requirement:
access-om3/dependencies/pr264-25/access3-share/2026.03.002-4kuvsco
access-om3/dependencies/pr264-25/access-cice/CICE6.6.3-2-gxojo5h
access-om3/dependencies/pr264-25/access-mocsy/2025.07.002-pz75hi5
access-om3/dependencies/pr264-25/access-generic-tracers/115890145fc60799593aaae5a881f90cc9afa506-m5oqn7c access-om3/dependencies/pr264-25/access-mom6/0b48afd2da5f10fdb34d079ce3c538cfc421b1de-qb7jrcs access-om3/dependencies/pr264-25/access-ww3/2026.03.001-f3becjv access-om3/dependencies/pr264-25/access3/2026.03.002-mfvxyjb
Currently Loaded Modulefiles:
1) access-om3/dependencies/pr264-25/access3-share/2026.03.002-4kuvsco
2) access-om3/dependencies/pr264-25/access-cice/CICE6.6.3-2-gxojo5h
3) access-om3/dependencies/pr264-25/access-mocsy/2025.07.002-pz75hi5
4) access-om3/dependencies/pr264-25/access-generic-tracers/115890145fc60799593aaae5a881f90cc9afa506-m5oqn7c
5) access-om3/dependencies/pr264-25/access-mom6/0b48afd2da5f10fdb34d079ce3c538cfc421b1de-qb7jrcs
6) access-om3/dependencies/pr264-25/access-ww3/2026.03.001-f3becjv
7) access-om3/dependencies/pr264-25/access3/2026.03.002-mfvxyjb
8) access-om3/pr264-25
9) model-tools/mppnccombine-fast/2026.10.000-1
10) pbs
11) openmpi/5.0.8
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf_wo.o181534708 (last lines; modified 2026-10-19 13:27 AEDT)
Found experiment archive: /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
------ Job submitted ------
Submitted command: qsub -N payu_postscript -W depend=afterok:181548824.gadi-pbs -v PAYU_CURRENT_OUTPUT_DIR=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014,PAYU_CURRENT_RESTART_DIR=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/restart014,PAYU_ARCHIVE_DIR=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769,PAYU_CURRENT_RUN=14 -v PROJECT,SCRIPTS_DIR=/g/data/vk83/apps/om3-scripts -lstorage=gdata/ol01+gdata/vk83+scratch/x77+gdata/qv56+scratch/g40+gdata/xp65 /g/data/vk83/apps/om3-scripts/payu_config/postscript.sh
Job ID: 181548825.gadi-pbs
payu: Found modules in /opt/Modules/v4.3.0
laboratory path: /scratch/x77/aek156/access-om3
binary path: /scratch/x77/aek156/access-om3/bin
input path: /scratch/x77/aek156/access-om3/input
work path: /scratch/x77/aek156/access-om3/work
archive path: /scratch/x77/aek156/access-om3/archive
Found experiment archive: /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
Loading input manifest: manifests/input.yaml
Loading restart manifest: manifests/restart.yaml
Loading exe manifest: manifests/exe.yaml
payu: Found modules in /opt/Modules/v4.3.0
------ Job submitted ------
Submitted command: qsub -P g40 -l walltime=8:00:00 -l ncpus=2704 -l mem=13000GB -l jobfs=10GB -N 25km_jra_iaf_wo -l wd -j n -W umask=027 -q normalsr -l storage=gdata/vk83+scratch/x77+gdata/qv56+gdata/ol01 -v PAYU_PATH=/containerised_envs/payu/1.3.6_1/bin,PAYU_CURRENT_RUN=15,PAYU_N_RUNS=51,MODULESHOME=/opt/Modules/v4.3.0,MODULES_CMD=/opt/Modules/v4.3.0/libexec/modulecmd.tcl,MODULEPATH=/g/data/vk83/prerelease/modules:/g/data/xp65/public/modules:/g/data/vk83/modules:/etc/scl/modulefiles:/apps/Modules/restricted-modulefiles/matlab_anu:/opt/Modules/modulefiles:/opt/Modules/v4.3.0/modulefiles:/apps/Modules/modulefiles -- /g/data/vk83/apps/containerised_envs/envs/payu/1.3.6_1/bin/launcher.sh /containerised_envs/payu/1.3.6_1/bin/python3.10 /containerised_envs/payu/1.3.6_1/bin/payu-run
Job ID: 181548870.gadi-pbs
======================================================================================
Resource Usage on 2026-10-19 13:27:03:
Job Id: 181534708.gadi-pbs
Project: g40
Exit Status: 0
Service Units: 19094.75
NCPUs Requested: 2704 CPU Time Used: 9463:06:21
Memory Requested: 12.7TB Memory Used: 2.33TB
Walltime Requested: 08:00:00 Walltime Used: 03:31:51
JobFS Requested: 10.0GB JobFS Used: 17.85MB
======================================================================================
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/payu_postscript.o181548825 (last lines; modified 2026-10-19 14:34 AEDT)
/g/data/xp65/public/apps/med_conda/envs/analysis3-25.05/lib/python3.11/site-packages/access_nri_intake/source/utils.py:142: UserWarning: Time coordinate does not include bounds information. Guessing start and end times.
warnings.warn(
/g/data/xp65/public/apps/med_conda/envs/analysis3-25.05/lib/python3.11/site-packages/access_nri_intake/source/utils.py:142: UserWarning: Time coordinate does not include bounds information. Guessing start and end times.
warnings.warn(
/g/data/xp65/public/apps/med_conda/envs/analysis3-25.05/lib/python3.11/site-packages/access_nri_intake/source/utils.py:142: UserWarning: Time coordinate does not include bounds information. Guessing start and end times.
warnings.warn(
/g/data/xp65/public/apps/med_conda/envs/analysis3-25.05/lib/python3.11/site-packages/intake_esm/cat.py:187: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.11/migration/
data = self.dict().copy()
[32m[22mSucessfully built esm-datastore![0m
[34m[22mSaving esm-datastore to [36m[1m/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/archive[0m
Successfully wrote ESM catalog json file to: file:///home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/archive/experiment_datastore.json
[34m[22mHashing catalog to prevent unnecessary rebuilds.
This may take some time...[0m
[32m[22mCatalog sucessfully hashed![0m
[32m[22mDatastore sucessfully written to [36m[1m/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/archive/experiment_datastore.json[32m[22m!
[34m[22mPlease note that this has not added the datastore to the access-nri-intake catalog.
To add to catalog, please run '[37m[1mscaffold_catalog_entry[34m[22m' for help on how to do so.
sys:1: DeprecationWarning: Call to deprecated function (or staticmethod) _destroy.
======================================================================================
Resource Usage on 2026-10-19 14:34:58:
Job Id: 181548825.gadi-pbs
Project: g40
Exit Status: 0
Service Units: 31.60
NCPUs Requested: 104 CPU Time Used: 05:12:18
Memory Requested: 500.0GB Memory Used: 269.17GB
Walltime Requested: 00:30:00 Walltime Used: 00:09:07
JobFS Requested: 100.0GB JobFS Used: 0B
======================================================================================
Check this on Gadi: when these logs were written, and their last lines
# WHAT THIS DOES: for each log file listed above, prints when it was last changed and its last 30
# lines, which are the lines the page shows.
# 'for' repeats the three lines below once for each file; $f is the file it is on.
# 'ls -l' lists a file with details; --time-style=long-iso writes its time as 2026-07-01 00:02.
for f in /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.err /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.out /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/work/log/med.log /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf__c.o181548824 /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf__c.e181548824 /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/25km_jra_iaf_wo.o181534708 /home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/payu_postscript.o181548825; do
echo "== $f" # which file this is
ls -l --time-style=long-iso "$f" # when it was last changed (the date and time are in the middle)
tail -n 30 "$f" # its last 30 lines
done
Truncation locations
✅ No velocity truncations so far in the run segment currently underway (work/ocean.stats).
Check this on Gadi: the truncation counts, locations and settings
# WHAT THIS DOES: re-checks the 'Truncation locations' section from the files MOM6 wrote. A
# truncation is when MOM6 had to cut a velocity that was too fast (its CFL number was above 0.5): a
# sign of numerical trouble. The steps below are separate, so you can paste just the one you need.
# Each prints something you can compare with the page.
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# Step 1: for each work folder: how many truncations MOM6 reported, the largest CFL number, and how many location records were written
for o in "$R"/work; do
# ocean.stats is a table with one line per time step. Its 3rd column ('Truncs') is the truncations at that
# step. awk adds that column up. (-F, means the columns are separated by commas. The header line is skipped
# because its first column is not a number.)
total=$(awk -F, '$1+0 == $1 {sum += $3} END {print sum+0}' "$o/ocean.stats" 2>/dev/null)
# The 5th column holds two numbers; the second one is the CFL number. awk keeps the largest.
cfl=$(awk -F, '$1+0 == $1 {split($5, a, " "); if (a[2] > max) max = a[2]} END {if (max != "") printf "%.2f", max}' "$o/ocean.stats" 2>/dev/null)
# Every truncation also gets a 'location record' in the U and V files. grep -c counts the matching lines.
u=$(grep -c 'velocity violation' "$o/U_velocity_truncations" 2>/dev/null)
v=$(grep -c 'velocity violation' "$o/V_velocity_truncations" 2>/dev/null)
# ${x:--} means: use x, or a dash if x is empty (no such file)
echo "$(basename "$o"): truncations ${total:--}, max CFL ${cfl:--}, location records U/V ${u:--}/${v:--}"
done
# Step 2: where it happens. Each record contains the place, like '( 73.27 E 67.89 N)'. This counts the records in
# boxes one degree wide (negative longitude means west), busiest first. The pipeline does this:
# grep: keep the lines that start a record sed: keep only the longitude and latitude
# awk: round them to whole degrees sort | uniq -c: count the records in each box
# sort -rn | head: busiest boxes first
grep -h 'velocity violation' "$R"/work/[UV]_velocity_truncations 2>/dev/null \
| sed -E 's/.*\( *(-?[0-9.]+) E +(-?[0-9.]+) N\).*/\1 \2/' \
| awk '{printf "%4.0fE %4.0fN\n", $1, $2}' \
| sort | uniq -c | sort -rn | head -n 15
# Step 3: MOM6 writes at most 50 records per PE (one of the parallel processes) in one run, then stops. A PE with
# 50 records may have truncated more often than the records show. This lists the PEs that reached 50.
for f in "$R"/work/[UV]_velocity_truncations; do
[ -f "$f" ] || continue # skip if there is no such file
# each record says which PE it came from ('violation at 6073:'); count the records per PE, keep PEs with 50
busy=$(grep -h 'velocity violation' "$f" | sed -E 's/.*violation at ([0-9]+):.*/PE\1/' | sort | uniq -c | awk '$1 >= 50 {printf "%s (%d records) ", $2, $1}')
echo "$(basename "$(dirname "$f")")/$(basename "$f"): $busy"
done
# Step 4: the settings that decide when MOM6 truncates (CFL_TRUNCATE) and when it stops the run (MAXTRUNC).
# Each is shown as it is set in MOM_input and in MOM6's own record of every setting, which also gives its default.
grep -hE '^(CFL_TRUNCATE|MAXTRUNC) ' "$R"/MOM_input "$R"/docs/MOM_parameter_doc.all
Configuration files
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/config.yaml (modified 2026-10-16 18:24 AEDT)
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/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/MOM_input (modified 2026-10-19 06:19 AEDT)
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/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/ice_in (modified 2026-10-16 17:43 AEDT)
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/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/nuopc.runconfig (modified 2026-10-16 20:06 AEDT)
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/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/nuopc.runseq (modified 2026-10-19 06:18 AEDT)
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Check this on Gadi: when these files were last modified
# WHAT THIS DOES: prints when each configuration file shown above was last changed (the 'modified'
# time in each title).
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# 'cd' goes into the control directory, where these files are
cd "$R"
# 'ls -l' lists files with details; --time-style=long-iso writes the time as 2026-07-01 00:02
ls -l --time-style=long-iso config.yaml MOM_input ice_in nuopc.runconfig nuopc.runseq
Archive folder: completed runs
Read from the payu archive folder /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769.
- Output folders: 15 (latest
output014) - Model date reached: 1973-01-01
- Runs recorded by payu: 19, of which failed: 3
Check this on Gadi: these counts
# WHAT THIS DOES: re-counts the 'Archive folder' list: how many output folders there are, which is
# the latest, how many runs payu recorded, how many of those failed, and how far the model got. The
# four lines it prints should match the page.
A=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
# Step 1: count the output folders (output000, output001, ...) and name the last one
ls -d "$A"/output[0-9]* | wc -l
basename "$(ls -d "$A"/output[0-9]* | tail -n 1)"
# Step 2: read payu's run records with a few lines of python, and count them
python3 - "$A" <<'EOF'
import glob, json, os, sys
# payu keeps one small file for every run: payu_jobs/<number>/run/<job>.json. Read them all.
archive = sys.argv[1] # the archive folder, handed over by the shell line above
runs = []
for path in glob.glob(archive + "/payu_jobs/*/run/*.json"):
try:
with open(path) as f:
record = json.load(f)
record["file"] = path # remember which file it came from
runs.append(record)
except (OSError, ValueError):
pass # skip a file we may not read, or that is not valid JSON
# Put the runs in order: by run number, and by start time if a run was tried more than once.
runs.sort(key=lambda r: (int(r.get("payu_current_run") or 0), r.get("timings", {}).get("payu_start_time") or ""))
# a run failed if payu's exit status for it is not 0 (a run with no status yet is still going)
failed = [r for r in runs if r.get("payu_run_status") not in (0, None)]
print(len(runs), "runs recorded by payu,", len(failed), "failed")
# the model date reached is the finish date of the last run that has one
finished = [r for r in runs if r.get("model_finish_time")]
print("model date reached:", finished[-1]["model_finish_time"][:10] if finished else "unknown")
EOF
Model throughput
Simulated years per day, made by plot_sypd.py from the outputNNN/log/med.log files of the completed submissions in /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769.
Check this on Gadi: the rate in each output's med.log
# WHAT THIS DOES: for each output folder, finds the model's speed in its med.log (the mediator's
# log) and averages it. The speed, called the 'rate', is in simulated years per day (ypd). The
# figure plots these rates. You get one line per output folder: how many rate lines it had, and
# their average.
A=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
for o in "$A"/output[0-9]*; do
[ -f "$o/log/med.log" ] || continue # skip folders that have no med.log
# A line looks like: Model Date: 1958-09-04T00:00:00 ... rate = 7.09 ypd. awk reads the number just before
# 'ypd' (the second-last word), adds them up and counts them, then prints the average at the end.
awk -v name="$(basename "$o")" '/Model Date:/ && /ypd/ {count++; total += $(NF-1)} END {if (count) printf "%s: %d rate lines, mean %.2f ypd\n", name, count, total/count}' "$o/log/med.log"
done
Recent runs
From payu's job records in /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/payu_jobs; times are Canberra time.
| Run | PBS job | Result | Model period | Wall time (h) | SYPD | Record last modified |
|---|---|---|---|---|---|---|
| 15 | 181548870.gadi-pbs | model-run | 1973-01-01 → ? | 2026-10-19 13:29 AEDT | ||
| 14 | 181534708.gadi-pbs | ✅ | 1972-01-01 → 1973-01-01 | 3.5 | 6.82 | 2026-10-19 13:26 AEDT |
| 13 | 181523582.gadi-pbs | ✅ | 1971-01-01 → 1972-01-01 | 3.5 | 6.77 | 2026-10-19 09:54 AEDT |
| 12 | 181510443.gadi-pbs | ✅ | 1970-01-01 → 1971-01-01 | 4.1 | 5.84 | 2026-10-19 00:51 AEDT |
| 12 | 181508698.gadi-pbs | ❌ | 1970-01-01 → ? | 0.8 | 2026-10-18 20:08 AEDT | |
| 11 | 181504982.gadi-pbs | ✅ | 1969-01-01 → 1970-01-01 | 3.6 | 6.71 | 2026-10-18 19:19 AEDT |
| 10 | 181501958.gadi-pbs | ✅ | 1968-01-01 → 1969-01-01 | 3.5 | 6.82 | 2026-10-18 15:44 AEDT |
| 9 | 181498188.gadi-pbs | ✅ | 1967-01-01 → 1968-01-01 | 3.5 | 6.81 | 2026-10-18 12:12 AEDT |
| 9 | 181482091.gadi-pbs | ❌ | 1967-01-01 → ? | 3.7 | 2026-10-18 07:55 AEDT | |
| 8 | 181478818.gadi-pbs | ✅ | 1966-01-01 → 1967-01-01 | 3.6 | 6.68 | 2026-10-18 04:10 AEDT |
Check this on Gadi: this table
# WHAT THIS DOES: prints the 'Recent runs' table: the 10 newest runs, newest first. 'ok' means
# payu's exit status was 0. SYPD is simulated years per day: the model time the run covered, divided
# by the wall-clock time it took. (If payu did not record a run's start date this shows ?; the page
# may fill it in from the previous run.)
A=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
python3 - "$A" <<'EOF'
import glob, json, os, sys
# payu keeps one small file for every run: payu_jobs/<number>/run/<job>.json. Read them all.
archive = sys.argv[1] # the archive folder, handed over by the shell line above
runs = []
for path in glob.glob(archive + "/payu_jobs/*/run/*.json"):
try:
with open(path) as f:
record = json.load(f)
record["file"] = path # remember which file it came from
runs.append(record)
except (OSError, ValueError):
pass # skip a file we may not read, or that is not valid JSON
# Put the runs in order: by run number, and by start time if a run was tried more than once.
runs.sort(key=lambda r: (int(r.get("payu_current_run") or 0), r.get("timings", {}).get("payu_start_time") or ""))
import time
from datetime import datetime
print("Run PBS job Result Model period Hours SYPD Record last modified")
for r in reversed(runs[-10:]): # the last 10 runs, newest first
status = r.get("payu_run_status")
result = "ok" if status == 0 else ("failed" if status is not None else str(r.get("stage")))
start, finish = r.get("model_start_time"), r.get("model_finish_time")
seconds = r.get("timings", {}).get("payu_total_duration_seconds") # wall-clock seconds the run took
hours = "%.1f" % (seconds / 3600) if seconds else ""
sypd = ""
if start and finish and seconds:
# the model time the run covered, in whole days (dates look like 1958-01-01T00:00:00)
days = (datetime.strptime(finish[:19], "%Y-%m-%dT%H:%M:%S") - datetime.strptime(start[:19], "%Y-%m-%dT%H:%M:%S")).days
sypd = "%.2f" % (days / 365.25 / (seconds / 86400)) # model years divided by wall-clock days
changed = time.strftime("%Y-%m-%d %H:%M %Z", time.localtime(os.path.getmtime(r["file"])))
print("%-4s %-18s %-10s %-10s -> %-10s %6s %6s %s" % (r.get("payu_current_run"), r.get("scheduler_job_id"), result,
(start or "?")[:10], (finish or "?")[:10], hours, sypd, changed))
EOF
Latest logs in the archive folder
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/access-om3.err (last lines; modified 2026-10-19 13:25 AEDT)
(t_initf) Read in prof_inparm namelist from: drv_in
(t_initf) Using profile_disable= F
(t_initf) profile_timer= 4
(t_initf) profile_depth_limit= 4
(t_initf) profile_detail_limit= 2
(t_initf) profile_barrier= F
(t_initf) profile_outpe_num= 1
(t_initf) profile_outpe_stride= 0
(t_initf) profile_single_file= F
(t_initf) profile_global_stats= T
(t_initf) profile_ovhd_measurement= F
(t_initf) profile_add_detail= F
(t_initf) profile_papi_enable= F
WARNING from PE 0: set_diffusivity_init: SIMPLE_TKE_TO_KD can not be used reliably with USE_REGRIDDING.
WARNING from PE 0: diag_manager_mod::closing_file: module/output_field ocean_model/total_hfevapds, skip one time level, maybe send_data never called
WARNING from PE 0: diag_manager_mod::closing_file: module/output_field ocean_model/total_heat_content_massin, skip one time level, maybe send_data never called
Memuse(MB) at Memory HiWaterMark= 7.421E+02 6.555E+03 8.333E+02 8.784E+02
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/access-om3.out (last lines; modified 2026-10-19 13:26 AEDT)
(Ocean continuity equation) 105408 331.842023 615.068603 523.162747 53.425514 0.042 31 0 2429
(Ocean pressure force) 35136 662.736310 752.176047 712.140095 15.600535 0.057 31 0 2429
(Ocean vertical viscosity) 175680 110.947357 1039.272505 832.322543 249.369118 0.066 31 0 2429
(Ocean horizontal viscosity) 35136 84.302672 261.869539 222.628197 46.401119 0.018 31 0 2429
(Ocean momentum increments) 70272 34.808952 47.678465 43.791188 1.662875 0.003 31 0 2429
(Ocean message passing) 491904 150.418472 1625.368498 454.553481 327.641415 0.036 31 0 2429
(Ocean barotropic mode calc) 70272 1.348863 5.607451 2.262583 0.519358 0.000 31 0 2429
(Ocean barotropic mode stepping) 70272 520.740617 1509.589750 708.561603 143.397787 0.056 31 0 2429
(Ocean barotropic forcing calc) 70272 23.381194 64.770921 43.763170 10.454698 0.003 31 0 2429
(Ocean kappa_shear) 4392 17.628773 831.610983 230.592192 110.602208 0.018 31 0 2429
(Ocean diabatic entrain) 0 0.000000 0.000000 0.000000 0.000000 0.000 31 0 2429
(Ocean vert remap) 4392 19.145303 133.179107 74.597936 21.863132 0.006 31 0 2429
(Ocean set_diffusivity) 8784 51.326200 877.324739 276.347087 113.254365 0.022 31 0 2429
(Ocean KPP) 0 0.000000 0.000000 0.000000 0.000000 0.000 31 0 2429
(Ocean tracer_columns) 4392 1677.787244 2627.664282 2229.026634 83.835933 0.178 26 0 2429
(Ocean diabatic tridiag) 4392 1.736364 2.933329 2.133355 0.121598 0.000 41 0 2429
(Ocean diabatic message passing) 8784 1.324304 551.813348 108.598565 125.356520 0.009 41 0 2429
(Ocean differential diffusion) 0 0.000000 0.000000 0.000000 0.000000 0.000 41 0 2429
(Ocean find_uv_at_h) 8784 3.591350 5.663845 4.605041 0.337038 0.000 41 0 2429
(Ocean frazil) 8784 0.934846 5.088140 2.376359 1.095925 0.000 41 0 2429
(Ocean advect tracer) 4392 518.811735 555.101145 525.654770 6.205344 0.042 31 0 2429
(Ocean tracer halo updates) 26814 110.866410 527.997809 382.019870 110.605762 0.030 41 0 2429
(Ocean tracer global synch) 18030 12.604568 419.432310 141.136476 99.081591 0.011 41 0 2429
(Ocean diffuse tracer) 4392 53.909789 760.004741 602.789727 198.733631 0.048 31 0 2429
(Ocean epipycnal diffuse tracer) 0 0.000000 0.000000 0.000000 0.000000 0.000 31 0 2429
Ocean surface forcing 70273 61.192960 390.524521 128.775894 72.708956 0.010 11 0 2429
(Ocean forcing diagnostics) 39528 17.074948 19.244940 18.198624 0.293385 0.001 41 0 2429
MPP_STACK high water mark= 0
max rss=867569664.0 MB
med_finalize max rss=867569664.0 MB
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/access-om3.181508698.gadi-pbs.out (last lines; modified 2026-10-18 20:08 AEDT)
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
max rss=896348160.0 MB
FATAL from PE 0: There were a total of 1 locations detected with extreme surface values!
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/log/med.log (last lines; modified 2026-10-19 13:26 AEDT)
memory_write: model date = 1972-12-20T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-21T00:00:00 wall clock = 2026-10-19T13:18:55 avg dt = 34.08 s/day, dt = 34.47 s/day, rate = 6.87 ypd
memory_write: model date = 1972-12-21T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-22T00:00:00 wall clock = 2026-10-19T13:19:29 avg dt = 34.08 s/day, dt = 33.93 s/day, rate = 6.98 ypd
memory_write: model date = 1972-12-22T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-23T00:00:00 wall clock = 2026-10-19T13:20:04 avg dt = 34.08 s/day, dt = 34.50 s/day, rate = 6.86 ypd
memory_write: model date = 1972-12-23T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-24T00:00:00 wall clock = 2026-10-19T13:20:38 avg dt = 34.08 s/day, dt = 34.57 s/day, rate = 6.85 ypd
memory_write: model date = 1972-12-24T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-25T00:00:00 wall clock = 2026-10-19T13:21:13 avg dt = 34.08 s/day, dt = 34.88 s/day, rate = 6.79 ypd
memory_write: model date = 1972-12-25T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-26T00:00:00 wall clock = 2026-10-19T13:21:47 avg dt = 34.08 s/day, dt = 34.10 s/day, rate = 6.94 ypd
memory_write: model date = 1972-12-26T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-27T00:00:00 wall clock = 2026-10-19T13:22:22 avg dt = 34.08 s/day, dt = 34.32 s/day, rate = 6.90 ypd
memory_write: model date = 1972-12-27T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-28T00:00:00 wall clock = 2026-10-19T13:22:56 avg dt = 34.08 s/day, dt = 34.10 s/day, rate = 6.94 ypd
memory_write: model date = 1972-12-28T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-29T00:00:00 wall clock = 2026-10-19T13:23:30 avg dt = 34.08 s/day, dt = 34.17 s/day, rate = 6.93 ypd
memory_write: model date = 1972-12-29T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-30T00:00:00 wall clock = 2026-10-19T13:24:04 avg dt = 34.08 s/day, dt = 34.38 s/day, rate = 6.88 ypd
memory_write: model date = 1972-12-30T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
Model Date: 1972-12-31T00:00:00 wall clock = 2026-10-19T13:24:39 avg dt = 34.08 s/day, dt = 34.41 s/day, rate = 6.88 ypd
memory_write: model date = 1972-12-31T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
-------->(med_phases_restart_write) mediating for: 1972 12 31 23 45 0 0
(med_io_wopen) creating file access-om3.cpl.r.1973-01-01-00000.nc
Model Date: 1973-01-01T00:00:00 wall clock = 2026-10-19T13:26:20 avg dt = 34.27 s/day, dt = 100.75 s/day, rate = 2.35 ypd
memory_write: model date = 1973-01-01T00:00:00 memory = -0.00 MB (highwater) 827.38 MB (usage)
(med_io_finalize) PIO decomposition cache hits = 9, builds = 3
SUCCESSFUL TERMINATION OF CMEPS
: =============== # simulated years / cmp-day = 6.908 ===============
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/pbs_logs/25km_jra_iaf_wo.o181508698 (last lines; modified 2026-10-18 20:08 AEDT)
Setting up access-om3
Checking exe, input and restart manifests
Writing manifests/restart.yaml
mod access-om3/dependencies/pr264-25/access3-share/2026.03.002-4kuvsco
mod access-om3/dependencies/pr264-25/access-cice/CICE6.6.3-2-gxojo5h
mod access-om3/dependencies/pr264-25/access-mocsy/2025.07.002-pz75hi5
mod access-om3/dependencies/pr264-25/access-generic-tracers/115890145fc60799593aaae5a881f90cc9afa506-m5oqn7c
mod access-om3/dependencies/pr264-25/access-mom6/0b48afd2da5f10fdb34d079ce3c538cfc421b1de-qb7jrcs
mod access-om3/dependencies/pr264-25/access-ww3/2026.03.001-f3becjv
mod access-om3/dependencies/pr264-25/access3/2026.03.002-mfvxyjb
mod access-om3/pr264-25
mod model-tools/mppnccombine-fast/2026.10.000-1
2026-10-18 19:20:48: Run 12
mpirun --mca mpi_yield_when_idle true -wdir /scratch/x77/aek156/access-om3/work/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769 -np 2704 /scratch/x77/aek156/access-om3/work/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/access-om3-MOM6-CICE6
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.err /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/access-om3.181508698.gadi-pbs.err
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/access-om3.out /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/access-om3.181508698.gadi-pbs.out
/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite/env.yaml /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/env.181508698.gadi-pbs.yaml
payu: Found modules in /opt/Modules/v4.3.0
======================================================================================
Resource Usage on 2026-10-18 20:08:51:
Job Id: 181508698.gadi-pbs
Project: g40
Exit Status: 1
Service Units: 4406.02
NCPUs Requested: 2704 CPU Time Used: 2142:55:47
Memory Requested: 12.7TB Memory Used: 1.69TB
Walltime Requested: 08:00:00 Walltime Used: 00:48:53
JobFS Requested: 10.0GB JobFS Used: 18.76MB
======================================================================================
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/pbs_logs/25km_jra_iaf_wo.e181508698 (last lines; modified 2026-10-18 20:08 AEDT)
Loading access-om3/pr264-25
Loading requirement:
access-om3/dependencies/pr264-25/access3-share/2026.03.002-4kuvsco
access-om3/dependencies/pr264-25/access-cice/CICE6.6.3-2-gxojo5h
access-om3/dependencies/pr264-25/access-mocsy/2025.07.002-pz75hi5
access-om3/dependencies/pr264-25/access-generic-tracers/115890145fc60799593aaae5a881f90cc9afa506-m5oqn7c access-om3/dependencies/pr264-25/access-mom6/0b48afd2da5f10fdb34d079ce3c538cfc421b1de-qb7jrcs access-om3/dependencies/pr264-25/access-ww3/2026.03.001-f3becjv access-om3/dependencies/pr264-25/access3/2026.03.002-mfvxyjb
Currently Loaded Modulefiles:
1) access-om3/dependencies/pr264-25/access3-share/2026.03.002-4kuvsco
2) access-om3/dependencies/pr264-25/access-cice/CICE6.6.3-2-gxojo5h
3) access-om3/dependencies/pr264-25/access-mocsy/2025.07.002-pz75hi5
4) access-om3/dependencies/pr264-25/access-generic-tracers/115890145fc60799593aaae5a881f90cc9afa506-m5oqn7c
5) access-om3/dependencies/pr264-25/access-mom6/0b48afd2da5f10fdb34d079ce3c538cfc421b1de-qb7jrcs
6) access-om3/dependencies/pr264-25/access-ww3/2026.03.001-f3becjv
7) access-om3/dependencies/pr264-25/access3/2026.03.002-mfvxyjb
8) access-om3/pr264-25
9) model-tools/mppnccombine-fast/2026.10.000-1
10) pbs
11) openmpi/5.0.8
[WARNING] Commit without gpg signing.
[ERROR] Model exited with error code 1
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/env.181508698.gadi-pbs.yaml (last lines; modified 2026-10-18 20:08 AEDT)
MANPATH: /apps/openmpi/5.0.8/share/man:/opt/pbs/default/share/man
MANPATH_modshare: /apps/openmpi/5.0.8/share/man:1:/opt/pbs/default/share/man:1
OMPI_ROOT: /apps/openmpi/5.0.8
LD_RUN_PATH: /apps/openmpi/5.0.8/lib
CPLUS_INCLUDE_PATH_modshare: /apps/openmpi/5.0.8/include:1
CPATH: /apps/openmpi/5.0.8/include
LIBRARY_PATH: /apps/openmpi/5.0.8/lib
OMPI_VERSION: 5.0.8
MODULES_LMCONFLICT:
openmpi/5.0.8&intel-mpi&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars
OPENMPI_ROOT: /apps/openmpi/5.0.8
UCC_LOG_LEVEL: error
FPATH: /apps/openmpi/5.0.8/include
LIBRARY_PATH_modshare: /apps/openmpi/5.0.8/lib:1
OMPI_PRTERUN: /apps/prrte/4.0.0/bin/prterun
C_INCLUDE_PATH_modshare: /apps/openmpi/5.0.8/include:1
MODULES_LMCONFLICT_modshare:
openmpi/5.0.8&intel-mpi&o/ld_library_path&o/yes-ld_library_path&o/use-ld_library_path&o/enable-ld_library_path&o/with-ld_library_path&o/no-ld_library_path&o/not-ld_library_path&o/disable-ld_library_path&o/without-ld_library_path&o/ld_run_path&o/yes-ld_run_path&o/use-ld_run_path&o/enable-ld_run_path&o/with-ld_run_path&o/no-ld_run_path&o/not-ld_run_path&o/disable-ld_run_path&o/without-ld_run_path&o/show-debug&o/yes-show-debug&o/use-show-debug&o/enable-show-debug&o/with-show-debug&o/no-show-debug&o/not-show-debug&o/disable-show-debug&o/without-show-debug&o/append-paths&o/yes-append-paths&o/use-append-paths&o/enable-append-paths&o/with-append-paths&o/no-append-paths&o/not-append-paths&o/disable-append-paths&o/without-append-paths&o/library_path&o/yes-library_path&o/use-library_path&o/enable-library_path&o/with-library_path&o/no-library_path&o/not-library_path&o/disable-library_path&o/without-library_path&o/packaged-envvars&o/yes-packaged-envvars&o/use-packaged-envvars&o/enable-packaged-envvars&o/with-packaged-envvars&o/no-packaged-envvars&o/not-packaged-envvars&o/disable-packaged-envvars&o/without-packaged-envvars:1
FPATH_modshare: /apps/openmpi/5.0.8/include:1
CPLUS_INCLUDE_PATH: /apps/openmpi/5.0.8/include
OMPI_BASE: /apps/openmpi/5.0.8
OPENMPI_BASE: /apps/openmpi/5.0.8
LD_RUN_PATH_modshare: /apps/openmpi/5.0.8/lib:1
LD_LIBRARY_PATH_modshare: /apps/openmpi/5.0.8/lib:1
C_INCLUDE_PATH: /apps/openmpi/5.0.8/include
CPATH_modshare: /apps/openmpi/5.0.8/include:1
OPENMPI_VERSION: 5.0.8
UCC_TLS: ^sharp
PRTE_MCA_prte_tmpdir_base: /jobfs/181508698.gadi-pbs
PAYU_RUN_ID: a0a58636d39afac1d221b7fc71b99b3b70116e85
Check this on Gadi: when these logs were written, and their last lines
# WHAT THIS DOES: for each log file listed above, prints when it was last changed and its last 30
# lines, which are the lines the page shows.
# 'for' repeats the three lines below once for each file; $f is the file it is on.
# 'ls -l' lists a file with details; --time-style=long-iso writes its time as 2026-07-01 00:02.
for f in /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/access-om3.err /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/access-om3.out /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/access-om3.181508698.gadi-pbs.out /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/output014/log/med.log /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/pbs_logs/25km_jra_iaf_wo.o181508698 /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/pbs_logs/25km_jra_iaf_wo.e181508698 /scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/error_logs/env.181508698.gadi-pbs.yaml; do
echo "== $f" # which file this is
ls -l --time-style=long-iso "$f" # when it was last changed (the date and time are in the middle)
tail -n 30 "$f" # its last 30 lines
done
/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769/metadata.yaml
# ---- Automatically generated by Payu. Do not edit. ----
experiment_uuid: 8f50b769-b59e-48d1-b191-cd215f02c479
# ---- Automatically generated by Payu. User may edit if necessary. ----
name: MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
contact: Andrew Kiss
email: 31054815+aekiss@users.noreply.github.com
created: '2026-10-16'
url: https://github.com/ACCESS-NRI/access-om3-configs
model: ACCESS-OM3
schema_version: 1-0-4
# ---- User feel free to update. ----
description: |-
25km ACCESS-OM3 global configuration under interannual forcing.
Initial conditions of temperature and salinity are from WOA23.
Run with JRA55-do v1.6.0 interannually-varying forcing, 1 Jan 1958 - 31 Dec 2023.
This configuration includes WOMBATlite biogeochemistry with time-varying, globally-
averaged atmospheric CO2 forcing. Initial WOMBATlite prognostic tracer
concentrations are:
- no3, o2: from WOA23
- dic, alk: from GLODAPv2 2016b
- fe: from Huang et al. 2022 (DOI: 10.5281/zenodo.6994318)
- remaining tracers: set to constant values
notes: |-
ACCESS-NRI and COSIMA request that users of this model acknowledge those organisations
following the examples at https://www.access-nri.org.au/resources/acknowledging-us/
and https://cosima.org.au/index.php/get-involved/
keywords:
- JRA55
- access-om3
- interannual
- global
- bgc
realm:
- ocean
- seaIce
- ocnBgchem
nominal_resolution: 25 km
license: CC-BY-4.0
version: 0.0
long_description: test5.1 # Long description of the experiment (string)
# frequency: The frequency(/ies) included in the experiment (array of strings)
# variable: The variable(s) included in the experiment (array of strings)
# reference: Citation or reference information (string)
# parent_experiment: experiment_uuid for parent experiment if appropriate (string)
# related_experiments: experiment_uuids for any related experiment(s) (array of strings)
# parent_experiment_branch_time: The model time corresponding to the restart path used to create this branch, e.g., 1951-02-01T00:00:00 (string)
# parent_experiment_branch_commit: Git commit hash of the source branch when this new branch was created (string)
Truncation locations for all completed run segments
⚠️ MOM6 truncated velocities 10 times in 1 of 15 output folders (the Truncs column of each outputNNN/ocean.stats). MOM6 truncates a velocity when its CFL number exceeds CFL_TRUNCATE (0.5 by default), and stops the run if more than MAXTRUNC truncations happen between energy saves (MOM6's default is 0, so any truncation stops it; the ACCESS-OM3 configurations set 10,000). See MOM6 velocity truncations for how to read the records, and Examine_truncation_data.ipynb for mapping them.
Location records are the detailed records MOM6 also writes, one per truncation, to U_velocity_truncations (zonal velocity) and V_velocity_truncations (meridional velocity); the location table below is built from them. MOM6 writes at most 50 per PE per run, so there are usually fewer of them than truncations; – means no file of that kind.
| Output folder | Model period | Truncations | Max CFL | Location records (U / V) | PEs at the record cap |
|---|---|---|---|---|---|
| output000 | ? → 1959-01 | 10 | 0.33 | 1 / 9 | – |
The other 14 output folders had no truncations.
Where MOM6 truncates (1° boxes, most records first; from the U_velocity_truncations and V_velocity_truncations files):
| Location | Records | Grid cells | Seen in output | Velocity | Layers | Max speed (m/s) | Max CFL | Surface height (m) | Depth (m) |
|---|---|---|---|---|---|---|---|---|---|
| 65.2°W, 61.3°N | 9 | 5 | 000 | U, V | 1–1 | 32.6 | 2.22 | 0.04 | 153 |
| 65.6°W, 61.4°N | 1 | 1 | 000 | V | 1–1 | 8.1 | 0.55 | 0.02 | 243 |
* MOM6 writes at most 50 records per PE per run (MAX_TRUNC_FILE_SIZE_PER_PE), and this box's PE hit that cap in at least one run, so it truncated more often than the record count shows. Surface height is the top-interface height e, shown only for records that include layer 1; depth is the shallower of the two cells (D).
Check this on Gadi: the truncation counts, locations and settings
# WHAT THIS DOES: re-checks the 'Truncation locations' section from the files MOM6 wrote. A
# truncation is when MOM6 had to cut a velocity that was too fast (its CFL number was above 0.5): a
# sign of numerical trouble. The steps below are separate, so you can paste just the one you need.
# Each prints something you can compare with the page.
A=/scratch/x77/aek156/access-om3/archive/MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# Step 1: for each output folder: how many truncations MOM6 reported, the largest CFL number, and how many location records were written
for o in "$A"/output[0-9]*; do
# ocean.stats is a table with one line per time step. Its 3rd column ('Truncs') is the truncations at that
# step. awk adds that column up. (-F, means the columns are separated by commas. The header line is skipped
# because its first column is not a number.)
total=$(awk -F, '$1+0 == $1 {sum += $3} END {print sum+0}' "$o/ocean.stats" 2>/dev/null)
# The 5th column holds two numbers; the second one is the CFL number. awk keeps the largest.
cfl=$(awk -F, '$1+0 == $1 {split($5, a, " "); if (a[2] > max) max = a[2]} END {if (max != "") printf "%.2f", max}' "$o/ocean.stats" 2>/dev/null)
# Every truncation also gets a 'location record' in the U and V files. grep -c counts the matching lines.
u=$(grep -c 'velocity violation' "$o/U_velocity_truncations" 2>/dev/null)
v=$(grep -c 'velocity violation' "$o/V_velocity_truncations" 2>/dev/null)
# ${x:--} means: use x, or a dash if x is empty (no such file)
echo "$(basename "$o"): truncations ${total:--}, max CFL ${cfl:--}, location records U/V ${u:--}/${v:--}"
done
# Step 2: where it happens. Each record contains the place, like '( 73.27 E 67.89 N)'. This counts the records in
# boxes one degree wide (negative longitude means west), busiest first. The pipeline does this:
# grep: keep the lines that start a record sed: keep only the longitude and latitude
# awk: round them to whole degrees sort | uniq -c: count the records in each box
# sort -rn | head: busiest boxes first
grep -h 'velocity violation' "$A"/output[0-9]*/[UV]_velocity_truncations 2>/dev/null \
| sed -E 's/.*\( *(-?[0-9.]+) E +(-?[0-9.]+) N\).*/\1 \2/' \
| awk '{printf "%4.0fE %4.0fN\n", $1, $2}' \
| sort | uniq -c | sort -rn | head -n 15
# Step 3: MOM6 writes at most 50 records per PE (one of the parallel processes) in one run, then stops. A PE with
# 50 records may have truncated more often than the records show. This lists the PEs that reached 50.
for f in "$A"/output[0-9]*/[UV]_velocity_truncations; do
[ -f "$f" ] || continue # skip if there is no such file
# each record says which PE it came from ('violation at 6073:'); count the records per PE, keep PEs with 50
busy=$(grep -h 'velocity violation' "$f" | sed -E 's/.*violation at ([0-9]+):.*/PE\1/' | sort | uniq -c | awk '$1 >= 50 {printf "%s (%d records) ", $2, $1}')
echo "$(basename "$(dirname "$f")")/$(basename "$f"): $busy"
done
# Step 4: one record in full. The page reads the speed (u, v), the CFL number, the surface height (e) and the
# depth (D) from lines like these.
head -n 30 "$A"/output000/U_velocity_truncations
# Step 5: the model period of each output folder, from payu's run records (output NNN is run NNN)
python3 - "$A" <<'EOF'
import glob, json, os, sys
# payu keeps one small file for every run: payu_jobs/<number>/run/<job>.json. Read them all.
archive = sys.argv[1] # the archive folder, handed over by the shell line above
runs = []
for path in glob.glob(archive + "/payu_jobs/*/run/*.json"):
try:
with open(path) as f:
record = json.load(f)
record["file"] = path # remember which file it came from
runs.append(record)
except (OSError, ValueError):
pass # skip a file we may not read, or that is not valid JSON
# Put the runs in order: by run number, and by start time if a run was tried more than once.
runs.sort(key=lambda r: (int(r.get("payu_current_run") or 0), r.get("timings", {}).get("payu_start_time") or ""))
for r in runs:
run, finish = r.get("payu_current_run"), r.get("model_finish_time")
if str(run).isdigit() and finish: # only runs that finished have a model period
start = r.get("model_start_time") or "?" # payu did not record the start of the first run
print("output%03d %s -> %s" % (int(run), start[:7], finish[:7]))
EOF
# Step 6: the settings that decide when MOM6 truncates (CFL_TRUNCATE) and when it stops the run (MAXTRUNC).
# Each is shown as it is set in MOM_input and in MOM6's own record of every setting, which also gives its default.
grep -hE '^(CFL_TRUNCATE|MAXTRUNC) ' "$R"/MOM_input "$R"/docs/MOM_parameter_doc.all
Settings changed during this run
Every edit to the model's settings and build during this experiment, from the git history of the payu control directory (/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite), starting at its first run commit (16 Oct 2026; 15 completed runs so far). It covers the completed runs (the archive folder above) and the current or crashed run (the run directory above): the dashed vertical line marks where the completed runs end. It reads MOM_input, MOM_override, nuopc.runconfig, ice_in and, from config.yaml, the model build (model, exe, modules) and the input files (input), plus the run length (stop_n and restart_n in nuopc.runconfig: the model time each run covers and how often it writes restarts). Each numbered dot is one edit: hover it to see the change, or use the table below, which gives the old and new value and the commit message. The column on the right of the chart gives each setting's value at the first run and now, and a setting's name links to where it is documented or set in access-om3-configs.
Current build
Entry in config.yaml |
Now | Changes |
|---|---|---|
| Model | access-om3 |
unchanged since the first run |
| Executable | access-om3-MOM6-CICE6 |
unchanged since the first run |
| Modules loaded | access-om3/pr264-25model-tools/mppnccombine-fast/2026.10.000-1 |
unchanged since the first run |
| # | When | After run (model date) | Setting | Change | Commit |
|---|---|---|---|---|---|
| 1 | 18 Oct 20:42 | 12 1971-01-01 | OceanDT | 900.0 → 720.0 | try reducing timestep from 900 to 720 to avoid extreme SSH, SST, SSS at lon=-176.871 lat=65.584 at 1970-03-22 8b4877b2 |
| 2 | 19 Oct 06:19 | 12 1971-01-01 | OceanDT | 720.0 → 900.0 | revert to 900s timestep 92081a88 |
Check this on Gadi: the build and every edit listed here
# WHAT THIS DOES: checks the 'Settings changed during this run' section. It prints the current build
# from config.yaml, counts payu's run commits, and lists every edit made to the settings files since
# the first run, using git (the history of changes kept in the control directory). The page shows
# these as setting values, so edits to comments or formatting do not appear there, and paths,
# layout, output and job settings are under its Housekeeping note. In the list of edits, a line
# starting with '-' was removed and a line starting with '+' was added.
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# Step 1: the current build: the 'model' and 'exe' lines of config.yaml, and its 'modules:' block
# (sed prints the lines from 'modules:' down to the next empty line)
grep -E '^(model|exe):' "$R/config.yaml"
sed -n '/^modules:/,/^$/p' "$R/config.yaml"
# Step 2: payu makes a git commit each time it starts a run, with a message ending in 'Run <number>'.
# This counts them. A run that crashed and was redone has two, and the page counts it once.
git -C "$R" log --first-parent --format=%s | grep -c ': Run [0-9]*$'
# These are the redone runs: how many run commits each has, then the run (prints nothing if none).
git -C "$R" log --first-parent --format=%s | grep -o 'Run [0-9]*$' | sort | uniq -c -d
# Step 3: find the first run commit (the history starts there)
FIRST=$(git -C "$R" log --first-parent --reverse --format='%H %s' | grep -m1 ': Run [0-9]*$' | cut -d' ' -f1)
# Step 4: every edit to the settings files after that, oldest first. Each edit starts with a line like
# '=== <commit> <date> <message>', followed by what changed.
git -C "$R" log -p --first-parent --reverse --format='=== %h %cI %s' "$FIRST"..HEAD -- config.yaml MOM_input MOM_override nuopc.runconfig ice_in
# If git says 'dubious ownership', the folder belongs to someone else: add -c safe.directory="$R" after the word git.
Where are my friends?
How this run's configuration relates to access-om3-configs: the newest commit that the control directory's history (latest commit 2ec5ddbb) shares with the configurations repository.
- Closest shared commit: 73f3acc on branch dev-MC_25km_jra_iaf+wombatlite · 2026-10-13 · “Cherry-pick commits from #1781 (#1786)”
- Changes in this run since then: 10 files changed, 153 insertions(+), 143 deletions(-)
- Closest tag: dev-MC_25km_jra55_ryf_0.5, 185 commits before the shared commit
- Changes in this run since that tag: 29 files changed, 6263 insertions(+), 1534 deletions(-)
Diff: this run vs dev-MC_25km_jra_iaf+wombatlite @ 73f3acc
diff --git a/MOM_input b/MOM_input
index fdfd300..27098c5 100644
--- a/MOM_input
+++ b/MOM_input
@@ -660,7 +660,7 @@ SIMPLE_TKE_TO_KD = True ! [Boolean] default = False
! === module MOM_bkgnd_mixing ===
! Adding static vertical background mixing coefficients
-KD = 1.5E-05 ! [m2 s-1] default = 0.0
+KD = 0.8E-05 ! [m2 s-1] default = 0.0
! The background diapycnal diffusivity of density in the interior. Zero or the
! molecular value, ~1e-7 m2 s-1, may be used.
KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07
diff --git a/auxiliary_input/MOM_channel_list b/auxiliary_input/MOM_channel_list
index d166580..40ca3de 100644
--- a/auxiliary_input/MOM_channel_list
+++ b/auxiliary_input/MOM_channel_list
@@ -3,7 +3,7 @@
! This is a modified version of
! https://raw.githubusercontent.com/NOAA-GFDL/MOM6-examples/4e9bf1c22f4d6f267389711715b68b3f3f53eea9/ocean_only/tides_025/INPUT/MOM_channels_global_025
-! U_width, -5.9, -5.4, 35.8, 36.2, 12000.0 ! Gibraltar
+U_width, -5.8, -5.45, 35.5, 36.3, 8000.0 ! Gibraltar
U_width, 26.3, 26.7, 40.4, 40.8, 5000.0 ! Dardanelles
V_width, 28.6, 29.2, 41.0, 41.2, 1000.0 ! Bosporus - should be 1km wide.
diff --git a/config.yaml b/config.yaml
index 8780260..e7c6259 100644
--- a/config.yaml
+++ b/config.yaml
@@ -2,15 +2,15 @@
# If submitting to a different project to your default, uncomment line below
# and change project code as appropriate; also set shortpath below
-# project: x77
+project: g40
# Force payu to always find, and save, files in this scratch project directory
-# shortpath: /scratch/v45
+shortpath: /scratch/x77
# Using payu sync is recommend to copy data from ephemeral scratch space to
# longer term storage
sync:
enable: False # set path below and change to true
- base_path: null # Set to location on /g/data (e.g. /g/data/PROJECT/USER/)
+ base_path: /g/data/ol01/outputs/access-om3-25km/ # Set to location on /g/data (e.g. /g/data/PROJECT/USER/)
restarts: True
exclude_uncollated: False
@@ -18,8 +18,9 @@ sync:
modules:
use:
- /g/data/vk83/modules
+ - /g/data/vk83/prerelease/modules
load:
- - access-om3/2026.05.004
+ - access-om3/pr264-25
- model-tools/mppnccombine-fast/2026.10.000-1
queue: normalsr
diff --git a/diag_table b/diag_table
index 04f7cf8..f8d69c5 100644
--- a/diag_table
+++ b/diag_table
@@ -79,6 +79,18 @@ ACCESS-OM3
"access-om3.mom6.3d.rsdoabsorb+z.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model_z", "rsdoabsorb", "rsdoabsorb", "access-om3.mom6.3d.rsdoabsorb+z.1mon.mean.%4yr", "all", "average", "none", 2
+"access-om3.mom6.3d.Ahh+z.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model_z", "Ahh", "Ahh", "access-om3.mom6.3d.Ahh+z.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Khh+z.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model_z", "Khh", "Khh", "access-om3.mom6.3d.Khh+z.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Kv_u+z.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model_z", "Kv_u", "Kv_u", "access-om3.mom6.3d.Kv_u+z.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Kv_v+z.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model_z", "Kv_v", "Kv_v", "access-om3.mom6.3d.Kv_v+z.1mon.mean.%4yr", "all", "average", "none", 2
+
# monthly 3d fields on rho2
@@ -112,18 +124,48 @@ ACCESS-OM3
"access-om3.mom6.3d.thkcello.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "thkcello", "thkcello", "access-om3.mom6.3d.thkcello.1mon.mean.%4yr", "all", "average", "none", 2
+"access-om3.mom6.3d.difvho.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "difvho", "difvho", "access-om3.mom6.3d.difvho.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.difvso.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "difvso", "difvso", "access-om3.mom6.3d.difvso.1mon.mean.%4yr", "all", "average", "none", 2
+
"access-om3.mom6.3d.Kd_interface.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "Kd_interface", "Kd_interface", "access-om3.mom6.3d.Kd_interface.1mon.mean.%4yr", "all", "average", "none", 2
"access-om3.mom6.3d.Kd_ePBL.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "Kd_ePBL", "Kd_ePBL", "access-om3.mom6.3d.Kd_ePBL.1mon.mean.%4yr", "all", "average", "none", 2
+"access-om3.mom6.3d.Kd_shear.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "Kd_shear", "Kd_shear", "access-om3.mom6.3d.Kd_shear.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Kd_itides.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "Kd_itides", "Kd_itides", "access-om3.mom6.3d.Kd_itides.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Kd_bkgnd.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "Kd_bkgnd", "Kd_bkgnd", "access-om3.mom6.3d.Kd_bkgnd.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.Kd_BBL.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "Kd_BBL", "Kd_BBL", "access-om3.mom6.3d.Kd_BBL.1mon.mean.%4yr", "all", "average", "none", 2
+
"access-om3.mom6.3d.diftrblo.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "diftrblo", "diftrblo", "access-om3.mom6.3d.diftrblo.1mon.mean.%4yr", "all", "average", "none", 2
"access-om3.mom6.3d.diftrelo.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "diftrelo", "diftrelo", "access-om3.mom6.3d.diftrelo.1mon.mean.%4yr", "all", "average", "none", 2
+"access-om3.mom6.3d.T_advection_scheme_variance_production.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "T_advection_scheme_variance_production", "T_advection_scheme_variance_production", "access-om3.mom6.3d.T_advection_scheme_variance_production.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.S_advection_scheme_variance_production.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "S_advection_scheme_variance_production", "S_advection_scheme_variance_production", "access-om3.mom6.3d.S_advection_scheme_variance_production.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.T_vardec.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "T_vardec", "T_vardec", "access-om3.mom6.3d.T_vardec.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.3d.S_vardec.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "S_vardec", "S_vardec", "access-om3.mom6.3d.S_vardec.1mon.mean.%4yr", "all", "average", "none", 2
+
# monthly 2d fields
@@ -211,6 +253,27 @@ ACCESS-OM3
"access-om3.mom6.2d.h_ML.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
"ocean_model", "h_ML", "h_ML", "access-om3.mom6.2d.h_ML.1mon.mean.%4yr", "all", "average", "none", 2
+"access-om3.mom6.2d.MEKE_KU.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "MEKE_KU", "MEKE_KU", "access-om3.mom6.2d.MEKE_KU.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.kv_bbl_u.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "kv_bbl_u", "kv_bbl_u", "access-om3.mom6.2d.kv_bbl_u.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.kv_bbl_v.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "kv_bbl_v", "kv_bbl_v", "access-om3.mom6.2d.kv_bbl_v.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.taux_bot.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "taux_bot", "taux_bot", "access-om3.mom6.2d.taux_bot.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.tauy_bot.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "tauy_bot", "tauy_bot", "access-om3.mom6.2d.tauy_bot.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.MSTAR.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "MSTAR", "MSTAR", "access-om3.mom6.2d.MSTAR.1mon.mean.%4yr", "all", "average", "none", 2
+
+"access-om3.mom6.2d.MSTAR_LT.1mon.mean.%4yr", 1, "months", 1, "days", "time", 1, "years"
+"ocean_model", "MSTAR_LT", "MSTAR_LT", "access-om3.mom6.2d.MSTAR_LT.1mon.mean.%4yr", "all", "average", "none", 2
+
# monthly 2d max fields
diff --git a/diag_table_source.yaml b/diag_table_source.yaml
index a401e78..f1b19f8 100644
--- a/diag_table_source.yaml
+++ b/diag_table_source.yaml
@@ -186,6 +186,10 @@ diag_table:
KE: # Layer Kinetic energy per unit mass
Kd_Itidal_Work: # Work done by Internal Tide Diapycnal Mixing
rsdoabsorb: # Convergence of Penetrative Shortwave Flux in Sea Water Layer
+ Ahh: # Biharmonic Horizontal Viscosity at h Points
+ Khh: # Laplacian Horizontal Viscosity at h Points
+ Kv_u: # Total vertical viscosity at u-points
+ Kv_v: # Total vertical viscosity at v-points
'monthly 3d fields on rho2':
defaults: # these can be overridden for individual fields below
@@ -209,10 +213,20 @@ diag_table:
fields:
e: # Interface height relative to mean sea level
thkcello: # Cell Thickness
+ difvho: # Kd_heat: Total diapycnal diffusivity for heat at interfaces
+ difvso: # Kd_salt: Total diapycnal diffusivity for salt at interfaces
Kd_interface: # Total diapycnal diffusivity at interfaces
Kd_ePBL: # ePBL diapycnal diffusivity at interfaces
+ Kd_shear: # Shear-driven Diapycnal Diffusivity at horizontal tracer points
+ Kd_itides: # Internal Tide Driven Diffusivity
+ Kd_bkgnd: # Background diffusivity added by MOM_bkgnd_mixing module
+ Kd_BBL: # Bottom Boundary Layer Diffusivity
diftrblo: # Ocean Tracer Diffusivity due to Parameterized Mesoscale Advection
diftrelo: # Ocean Tracer Epineutral Laplacian Diffusivity
+ T_advection_scheme_variance_production: # Spurious variance production of T variance due to advection
+ S_advection_scheme_variance_production: # Spurious variance production of S variance due to advection
+ T_vardec: # ALE variance decay for conservative temperature
+ S_vardec: # ALE variance decay for absolute salinity
'monthly 2d fields':
defaults: # these can be overridden for individual fields below
@@ -247,6 +261,13 @@ diag_table:
ficeberg: # Frozen runoff (calving) and iceberg melt into ocean
ePBL_h_ML: # Surface boundary layer depth
h_ML: # Surface mixed layer depth based on active turbulence
+ MEKE_KU: # MEKE derived lateral viscosity
+ kv_bbl_u: # BBL viscosity at u points
+ kv_bbl_v: # BBL viscosity at v points
+ taux_bot: # Zonal Bottom Stress from Ocean to Earth
+ tauy_bot: # Meridional Bottom Stress from Ocean to Earth
+ MSTAR: # Total mstar that is used
+ MSTAR_LT: # Increase in mstar due to Langmuir Turbulence
'monthly 2d max fields':
defaults: # these can be overridden for individual fields below
diff --git a/docs/MOM_parameter_doc.all b/docs/MOM_parameter_doc.all
index 1619afe..6039a8d 100644
--- a/docs/MOM_parameter_doc.all
+++ b/docs/MOM_parameter_doc.all
@@ -650,85 +650,10 @@ FATAL_INCONSISTENT_RESTART_TIME = False ! [Boolean] default = False
! If true and a time_in value is provided to MOM_initialize_state, verify that
! the time read from a restart file is the same as time_in, and issue a fatal
! error if it is not. Otherwise, simply set the time to time_in if present.
-INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False
- ! If true, initialize the layer thicknesses, temperatures, and salinities from a
- ! Z-space file on a latitude-longitude grid.
-
-! === module MOM_initialize_layers_from_Z ===
-TEMP_SALT_Z_INIT_FILE = "./INPUT/woa23_ts_01_mom.nc" ! default = "temp_salt_z.nc"
- ! The name of the z-space input file used to initialize temperatures (T) and
- ! salinities (S). If T and S are not in the same file, TEMP_Z_INIT_FILE and
- ! SALT_Z_INIT_FILE must be set.
-TEMP_Z_INIT_FILE = "./INPUT/woa23_ts_01_mom.nc" ! default = "./INPUT/woa23_ts_01_mom.nc"
- ! The name of the z-space input file used to initialize temperatures, only.
-SALT_Z_INIT_FILE = "./INPUT/woa23_ts_01_mom.nc" ! default = "./INPUT/woa23_ts_01_mom.nc"
- ! The name of the z-space input file used to initialize temperatures, only.
-Z_INIT_FILE_PTEMP_VAR = "ptemp" ! default = "ptemp"
- ! The name of the potential temperature variable in TEMP_Z_INIT_FILE.
-Z_INIT_FILE_SALT_VAR = "salt" ! default = "salt"
- ! The name of the salinity variable in SALT_Z_INIT_FILE.
-Z_INIT_HOMOGENIZE = False ! [Boolean] default = False
- ! If True, then horizontally homogenize the interpolated initial conditions.
-Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False
- ! If True, then remap straight to model coordinate from file.
-Z_INIT_REMAPPING_SCHEME = "PPM_IH4" ! default = "PPM_IH4"
- ! The remapping scheme to use if using Z_INIT_ALE_REMAPPING is True.
-Z_INIT_REMAP_GENERAL = True ! [Boolean] default = False
- ! If false, only initializes to z* coordinates. If true, allows initialization
- ! directly to general coordinates.
-Z_INIT_REMAP_FULL_COLUMN = True ! [Boolean] default = True
- ! If false, only reconstructs profiles for valid data points. If true, inserts
- ! vanished layers below the valid data.
-Z_INIT_REMAP_OLD_ALG = False ! [Boolean] default = False
- ! If false, uses the preferred remapping algorithm for initialization. If true,
- ! use an older, less robust algorithm for remapping.
-TEMP_SALT_INIT_VERTICAL_REMAP_ONLY = True ! [Boolean] default = False
- ! If true, initial conditions are on the model horizontal grid. Extrapolation
- ! over missing ocean values is done using an ICE-9 procedure with vertical ALE
- ! remapping .
Z_INIT_REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = False
! If true, use the OM4 remapping-via-subcells algorithm for initialization. See
! REMAPPING_USE_OM4_SUBCELLS for more details. We recommend setting this option
! to false.
-HOR_REGRID_ANSWER_DATE = 99991231 ! default = 99991231
- ! The vintage of the order of arithmetic for horizontal regridding. Dates
- ! before 20190101 give the same answers as the code did in late 2018, while
- ! later versions add parentheses for rotational symmetry. Dates after 20230101
- ! use reproducing sums for global averages.
-LAND_FILL_TEMP = 0.0 ! [degC] default = 0.0
- ! A value to use to fill in ocean temperatures on land points.
-LAND_FILL_SALIN = 35.0 ! [ppt] default = 35.0
- ! A value to use to fill in ocean salinities on land points.
-HORIZ_INTERP_TOL_TEMP = 0.001 ! [degC] default = 0.001
- ! The tolerance in temperature changes between iterations when interpolating
- ! from an input dataset using horiz_interp_and_extrap_tracer. This routine
- ! converges slowly, so an overly small tolerance can get expensive.
-HORIZ_INTERP_TOL_SALIN = 0.001 ! [ppt] default = 0.001
- ! The tolerance in salinity changes between iterations when interpolating from
- ! an input dataset using horiz_interp_and_extrap_tracer. This routine converges
- ! slowly, so an overly small tolerance can get expensive.
-DEPRESS_INITIAL_SURFACE = False ! [Boolean] default = False
- ! If true, depress the initial surface to avoid huge tsunamis when a large
- ! surface pressure is applied.
-TRIM_IC_FOR_P_SURF = False ! [Boolean] default = False
- ! If true, cuts way the top of the column for initial conditions at the depth
- ! where the hydrostatic pressure matches the imposed surface pressure which is
- ! read from file.
-REGRID_ACCELERATE_INIT = False ! [Boolean] default = False
- ! If true, runs REGRID_ACCELERATE_ITERATIONS iterations of the regridding
- ! algorithm to push the initial grid to be consistent with the initial
- ! condition. Useful only for state-based and iterative coordinates.
-VELOCITY_CONFIG = "zero" ! default = "zero"
- ! A string that determines how the initial velocities are specified for a new
- ! run:
- ! file - read velocities from the file specified
- ! by (VELOCITY_FILE).
- ! zero - the fluid is initially at rest.
- ! uniform - the flow is uniform (determined by
- ! parameters INITIAL_U_CONST and INITIAL_V_CONST).
- ! rossby_front - a mixed layer front in thermal wind balance.
- ! soliton - Equatorial Rossby soliton.
- ! USER - call a user modified routine.
ODA_INCUPD = False ! [Boolean] default = False
! If true, oda incremental updates will be applied everywhere in the domain.
SPONGE = False ! [Boolean] default = False
@@ -1857,7 +1782,7 @@ MIX_BOUNDARY_TRACERS = True ! [Boolean] default = True
MIX_BOUNDARY_TRACER_ALE = False ! [Boolean] default = False
! If true and in ALE mode, mix the passive tracers in massless layers at the
! bottom into the interior as though a diffusivity of KD_MIN_TR were operating.
-KD_MIN_TR = 1.5E-06 ! [m2 s-1] default = 1.5E-06
+KD_MIN_TR = 8.0E-07 ! [m2 s-1] default = 8.0E-07
! A minimal diffusivity that should always be applied to tracers, especially in
! massless layers near the bottom. The default is 0.1*KD.
KD_BBL_TR = 0.0 ! [m2 s-1] default = 0.0
@@ -2041,10 +1966,10 @@ SIMPLE_TKE_TO_KD = True ! [Boolean] default = False
! === module MOM_bkgnd_mixing ===
! Adding static vertical background mixing coefficients
-KD = 1.5E-05 ! [m2 s-1] default = 0.0
+KD = 8.0E-06 ! [m2 s-1] default = 0.0
! The background diapycnal diffusivity of density in the interior. Zero or the
! molecular value, ~1e-7 m2 s-1, may be used.
-KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07
+KD_MIN = 2.0E-06 ! [m2 s-1] default = 8.0E-08
! The minimum diapycnal diffusivity.
BRYAN_LEWIS_DIFFUSIVITY = False ! [Boolean] default = False
! If true, use a Bryan & Lewis (JGR 1979) like tanh profile of background
@@ -2124,7 +2049,7 @@ SHEARMIX_RATE = 0.089 ! [nondim] default = 0.089
MAX_RINO_IT = 25 ! [nondim] default = 50
! The maximum number of iterations that may be used to estimate the Richardson
! number driven mixing.
-KD_KAPPA_SHEAR_0 = 1.5E-05 ! [m2 s-1] default = 1.5E-05
+KD_KAPPA_SHEAR_0 = 8.0E-06 ! [m2 s-1] default = 8.0E-06
! The background diffusivity that is used to smooth the density and shear
! profiles before solving for the diffusivities. The default is the greater of
! KD and 1e-7 m2 s-1.
@@ -2132,7 +2057,7 @@ KD_SEED_KAPPA_SHEAR = 1.0 ! [m2 s-1] default = 1.0
! A moderately large seed value of diapycnal diffusivity that is used as a
! starting turbulent diffusivity in the iterations to find an energetically
! constrained solution for the shear-driven diffusivity.
-KD_TRUNC_KAPPA_SHEAR = 1.5E-07 ! [m2 s-1] default = 1.5E-07
+KD_TRUNC_KAPPA_SHEAR = 8.0E-08 ! [m2 s-1] default = 8.0E-08
! The value of shear-driven diffusivity that is considered negligible and is
! rounded down to 0. The default is 1% of KD_KAPPA_SHEAR_0.
FRI_CURVATURE = -0.97 ! [nondim] default = -0.97
diff --git a/docs/MOM_parameter_doc.short b/docs/MOM_parameter_doc.short
index 3d311ab..687922c 100644
--- a/docs/MOM_parameter_doc.short
+++ b/docs/MOM_parameter_doc.short
@@ -249,24 +249,6 @@ REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = True
! recommend setting this option to false.
! === module MOM_state_initialization ===
-INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False
- ! If true, initialize the layer thicknesses, temperatures, and salinities from a
- ! Z-space file on a latitude-longitude grid.
-
-! === module MOM_initialize_layers_from_Z ===
-TEMP_SALT_Z_INIT_FILE = "./INPUT/woa23_ts_01_mom.nc" ! default = "temp_salt_z.nc"
- ! The name of the z-space input file used to initialize temperatures (T) and
- ! salinities (S). If T and S are not in the same file, TEMP_Z_INIT_FILE and
- ! SALT_Z_INIT_FILE must be set.
-Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False
- ! If True, then remap straight to model coordinate from file.
-Z_INIT_REMAP_GENERAL = True ! [Boolean] default = False
- ! If false, only initializes to z* coordinates. If true, allows initialization
- ! directly to general coordinates.
-TEMP_SALT_INIT_VERTICAL_REMAP_ONLY = True ! [Boolean] default = False
- ! If true, initial conditions are on the model horizontal grid. Extrapolation
- ! over missing ocean values is done using an ICE-9 procedure with vertical ALE
- ! remapping .
! === module MOM_diag_mediator ===
NUM_DIAG_COORDS = 2 ! default = 1
@@ -618,10 +600,10 @@ SIMPLE_TKE_TO_KD = True ! [Boolean] default = False
! === module MOM_bkgnd_mixing ===
! Adding static vertical background mixing coefficients
-KD = 1.5E-05 ! [m2 s-1] default = 0.0
+KD = 8.0E-06 ! [m2 s-1] default = 0.0
! The background diapycnal diffusivity of density in the interior. Zero or the
! molecular value, ~1e-7 m2 s-1, may be used.
-KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07
+KD_MIN = 2.0E-06 ! [m2 s-1] default = 8.0E-08
! The minimum diapycnal diffusivity.
HENYEY_IGW_BACKGROUND = True ! [Boolean] default = False
! If true, use a latitude-dependent scaling for the near surface background
diff --git a/docs/available_diags.000000 b/docs/available_diags.000000
index 485cdad..52cc426 100644
--- a/docs/available_diags.000000
+++ b/docs/available_diags.000000
@@ -180,7 +180,7 @@
! long_name: MEKE derived diffusivity
! units: m2 s-1
! cell_methods: xh:mean yh:mean area:mean
-"MEKE_KU" [Unused]
+"MEKE_KU" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xh, yh
! long_name: MEKE derived lateral viscosity
@@ -388,7 +388,7 @@
! long_name: BBL thickness at u points
! units: m
! cell_methods: xq:point yh:mean
-"kv_bbl_u" [Unused]
+"kv_bbl_u" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xq, yh
! long_name: BBL viscosity at u points
@@ -406,7 +406,7 @@
! long_name: BBL thickness at v points
! units: m
! cell_methods: xh:mean yq:point
-"kv_bbl_v" [Unused]
+"kv_bbl_v" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xh, yq
! long_name: BBL viscosity at v points
@@ -757,7 +757,7 @@
! units: m s-2
! cell_methods: xh:mean yq:point zl:mean
! variants: {diffv_visc_rem,diffv_visc_rem_xyave}
-"Ahh" [Unused] (CMOR equivalent is "difmxybo")
+"Ahh" [Used] (CMOR equivalent is "difmxybo")
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: Biharmonic Horizontal Viscosity at h Points
@@ -777,7 +777,7 @@
! units: nondim
! cell_methods: xh:mean yh:mean zl:mean area:mean
! variants: {grid_Re_Ah,grid_Re_Ah_xyave}
-"Khh" [Unused] (CMOR equivalent is "difmxylo")
+"Khh" [Used] (CMOR equivalent is "difmxylo")
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: Laplacian Horizontal Viscosity at h Points
@@ -857,14 +857,14 @@
! units: m2 s-1
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {Kv_slow,Kv_slow_xyave}
-"Kv_u" [Unused]
+"Kv_u" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xq, yh, zl
! long_name: Total vertical viscosity at u-points
! units: m2 s-1
! cell_methods: xq:point yh:mean zl:mean
! variants: {Kv_u,Kv_u_xyave}
-"Kv_v" [Unused]
+"Kv_v" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yq, zl
! long_name: Total vertical viscosity at v-points
@@ -988,13 +988,13 @@
! units: m s-2
! cell_methods: xh:mean yq:point zl:mean
! variants: {dv_dt_str,dv_dt_str_xyave}
-"taux_bot" [Unused]
+"taux_bot" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xq, yh
! long_name: Zonal Bottom Stress from Ocean to Earth
! units: Pa
! cell_methods: xq:point yh:mean
-"tauy_bot" [Unused]
+"tauy_bot" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xh, yq
! long_name: Meridional Bottom Stress from Ocean to Earth
@@ -2900,14 +2900,14 @@
! units: m2 s-1
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {Kd_ePBL,Kd_ePBL_xyave}
-"Kd_heat" [Unused] (CMOR equivalent is "difvho")
+"Kd_heat" [Used] (CMOR equivalent is "difvho")
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Total diapycnal diffusivity for heat at interfaces
! units: m2 s-1
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {Kd_heat,Kd_heat_xyave,difvho,difvho_xyave}
-"Kd_salt" [Unused] (CMOR equivalent is "difvso")
+"Kd_salt" [Used] (CMOR equivalent is "difvso")
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Total diapycnal diffusivity for salt at interfaces
@@ -3045,7 +3045,7 @@
! long_name: Depth integrated heat tendency due to frazil formation
! units: W m-2
! cell_methods: xh:mean yh:mean area:mean
-"Kd_itides" [Unused]
+"Kd_itides" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Internal Tide Driven Diffusivity
@@ -3130,14 +3130,14 @@
! units: W m-2
! cell_methods: xh:mean yh:mean zl:mean area:mean
! variants: {Kd_Lowmode_Work,Kd_Lowmode_Work_xyave}
-"Kd_BBL" [Unused]
+"Kd_BBL" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Bottom Boundary Layer Diffusivity
! units: m2 s-1
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {Kd_BBL,Kd_BBL_xyave}
-"Kd_bkgnd" [Unused]
+"Kd_bkgnd" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Background diffusivity added by MOM_bkgnd_mixing module
@@ -3193,7 +3193,7 @@
! units: s-2
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {N2,N2_xyave,obvfsq,obvfsq_xyave}
-"Kd_shear" [Unused]
+"Kd_shear" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zi
! long_name: Shear-driven Diapycnal Diffusivity at horizontal tracer points
@@ -3365,7 +3365,7 @@
! units: m s-1
! cell_methods: xh:mean yh:mean zi:point area:mean
! variants: {Velocity_Scale,Velocity_Scale_xyave}
-"MSTAR" [Unused]
+"MSTAR" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xh, yh
! long_name: Total mstar that is used.
@@ -3383,7 +3383,7 @@
! long_name: Modified Langmuir number.
! units: nondim
! cell_methods: xh:mean yh:mean area:mean
-"MSTAR_LT" [Unused]
+"MSTAR_LT" [Used]
! modules: {ocean_model,ocean_model_d2}
! dimensions: xh, yh
! long_name: Increase in mstar due to Langmuir Turbulence.
@@ -3729,7 +3729,7 @@
! units: W
! cell_methods: xh:sum yq:point zl:sum
! variants: {T_hbd_diffy,T_hbd_diffy_xyave}
-"T_advection_scheme_variance_production" [Unused]
+"T_advection_scheme_variance_production" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: Spurious variance production of T variance due to advection
@@ -3885,7 +3885,7 @@
! long_name: Vertical sum of vertical remapping tracer content tendency for Heat
! units: W m-2
! cell_methods: xh:mean yh:mean area:mean
-"T_vardec" [Unused]
+"T_vardec" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: ALE variance decay for conservative temperature
@@ -3948,7 +3948,7 @@
! units: psu m3 s-1
! cell_methods: xh:sum yq:point zl:sum
! variants: {S_hbd_diffy,S_hbd_diffy_xyave}
-"S_advection_scheme_variance_production" [Unused]
+"S_advection_scheme_variance_production" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: Spurious variance production of S variance due to advection
@@ -4104,7 +4104,7 @@
! long_name: Vertical sum of vertical remapping tracer content tendency for Salt
! units: kg m-2 s-1
! cell_methods: xh:mean yh:mean area:mean
-"S_vardec" [Unused]
+"S_vardec" [Used]
! modules: {ocean_model,ocean_model_z,ocean_model_rho2,ocean_model_d2,ocean_model_z_d2,ocean_model_rho2_d2}
! dimensions: xh, yh, zl
! long_name: ALE variance decay for absolute salinity
diff --git a/ice_in b/ice_in
index 2ac859f..a5bffa3 100644
--- a/ice_in
+++ b/ice_in
@@ -8,7 +8,7 @@
hist_time_axis = "middle"
history_deflate = 1
history_chunksize = 720, 540
- history_precision = 8
+ history_precision = 4
restart_deflate = 1
ice_ic = 'none'
lcdf64 = .false.
@@ -60,7 +60,7 @@
/
&forcing_nml
emissivity = 0.95d0
- ice_ref_salinity = 5.0d0
+ ice_ref_salinity = 3.2d0
highfreq = .true.
tfrz_option = "linear_salt"
update_ocn_f = .true.
@@ -164,8 +164,9 @@
f_rain = 'x'
f_fsens = 'x'
f_flwup = 'x'
- f_sig1 = 'x', f_sig2 = 'x'
+ f_sig1 = 'md', f_sig2 = 'md'
f_sigP = 'x'
+ f_strength = 'md'
f_snow = 'x'
f_sst = 'x'
f_sss = 'x'
diff --git a/metadata.yaml b/metadata.yaml
index 2b5a53c..e197de9 100644
--- a/metadata.yaml
+++ b/metadata.yaml
@@ -1,6 +1,17 @@
-contact: Add your name here
-email: Add your email address here
-created: Add the date you started the experiment here (YYYY-MM-DD)
+
+# ---- Automatically generated by Payu. Do not edit. ----
+experiment_uuid: 8f50b769-b59e-48d1-b191-cd215f02c479
+
+# ---- Automatically generated by Payu. User may edit if necessary. ----
+name: MC_25km_jra_iaf+wombatlite-test5.1-8f50b769
+contact: Andrew Kiss
+email: 31054815+aekiss@users.noreply.github.com
+created: '2026-10-16'
+url: https://github.com/ACCESS-NRI/access-om3-configs
+model: ACCESS-OM3
+schema_version: 1-0-4
+
+# ---- User feel free to update. ----
description: |-
25km ACCESS-OM3 global configuration under interannual forcing.
Initial conditions of temperature and salinity are from WOA23.
@@ -17,17 +28,23 @@ notes: |-
following the examples at https://www.access-nri.org.au/resources/acknowledging-us/
and https://cosima.org.au/index.php/get-involved/
keywords:
- - JRA55
- - access-om3
- - interannual
- - global
- - bgc
+- JRA55
+- access-om3
+- interannual
+- global
+- bgc
realm:
- - ocean
- - seaIce
- - ocnBgchem
+- ocean
+- seaIce
+- ocnBgchem
nominal_resolution: 25 km
license: CC-BY-4.0
-model: ACCESS-OM3
-url: https://github.com/ACCESS-NRI/access-om3-configs/tree/release-MC_25km_jra_iaf+wombatlite
version: 0.0
+long_description: test5.1 # Long description of the experiment (string)
+# frequency: The frequency(/ies) included in the experiment (array of strings)
+# variable: The variable(s) included in the experiment (array of strings)
+# reference: Citation or reference information (string)
+# parent_experiment: experiment_uuid for parent experiment if appropriate (string)
+# related_experiments: experiment_uuids for any related experiment(s) (array of strings)
+# parent_experiment_branch_time: The model time corresponding to the restart path used to create this branch, e.g., 1951-02-01T00:00:00 (string)
+# parent_experiment_branch_commit: Git commit hash of the source branch when this new branch was created (string)
Diff: this run vs tag dev-MC_25km_jra55_ryf_0.5
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
new file mode 100644
index 0000000..14199f2
--- /dev/null
+++ b/.readthedocs.yaml
@@ -0,0 +1,18 @@
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+# Required
+version: 2
+# Set the OS, Python version, and other tools you might need
+build:
+ os: ubuntu-24.04
+ tools:
+ python: "3.13"
+
+ jobs:
+ post_checkout:
+ # Cancel building pull requests which dont have docs
+ - |
+ exit 183;
+
+mkdocs:
+ configuration: documentation/mkdocs.yml
\ No newline at end of file
diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 0000000..e3f499e
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,158 @@
+cff-version: 1.2.0
+title: 'ACCESS-OM3 Configurations'
+message: >-
+ If you use this software, please cite it using the
+ metadata from this file.
+type: software
+authors:
+ - given-names: Jo
+ family-names: Basevi
+ email: Johanna.Basevi@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ - given-names: Pearse James
+ family-names: Buchanan
+ email: Pearse.Buchanan@csiro.au
+ affiliation: CSIRO Environment, Hobart, Australia
+ - given-names: Christopher Yit Sen
+ family-names: Bull
+ email: chris.bull@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0001-8362-3446'
+ - given-names: Martin
+ family-names: Dix
+ email: Martin.Dix@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0002-7534-0654'
+ - given-names: Tommy
+ family-names: Gatti
+ email: Tommy.Gatti@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ - given-names: Angus
+ family-names: Gibson
+ email: Angus.Gibson@anu.edu.au
+ affiliation: Research School of Earth Sciences, Australian National University
+ - given-names: Aidan
+ family-names: Heerdegen
+ email: Aidan.Heerdegen@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0002-4481-4896'
+ - given-names: Andrew McC
+ family-names: Hogg
+ email: Andy.Hogg@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0001-5898-7635'
+ - given-names: Harshula
+ family-names: Jayasuriya
+ email: Harshula.Jayasuriya@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0009-0009-2679-050X'
+ - given-names: Ezhilsabareesh
+ family-names: Kannadasan
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0003-1441-4311'
+ - given-names: Andrew E.
+ family-names: Kiss
+ email: andrew.kiss@anu.edu.au
+ affiliation: Research School of Earth Sciences, Australian National University
+ orcid: 'https://orcid.org/0000-0001-8960-9557'
+ - given-names: Minghang
+ family-names: Li
+ email: Minghang.Li1@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ - given-names: Davide
+ family-names: Marchegiani
+ email: Davide.Marchegiani@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0002-7619-7976'
+ - given-names: Adele
+ family-names: Morrison
+ email: Adele.Morrison@anu.edu.au
+ affiliation: Research School of Earth Sciences, Australian National University
+ orcid: 'https://orcid.org/0000-0002-9904-4980'
+ - given-names: Siobhan
+ family-names: O'Farrell
+ email: Siobhan.O'Farrell@csiro.au
+ affiliation: Commonwealth Scientific and Industrial Research
+ orcid: 'https://orcid.org/0000-0002-9019-6136'
+ - given-names: Micael
+ family-names: Oliveira
+ email: Micael.Oliveira@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0003-1364-0907'
+ - given-names: Kieran
+ family-names: Ricardo
+ email: Kieran.Ricardo@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ - given-names: Manodeep
+ family-names: Sinha
+ email: Manodeep.Sinha@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0002-4845-1228'
+ - given-names: Dougal
+ family-names: Squire
+ email: Dougie.Squire@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0000-0003-3271-6874'
+ - given-names: Anton
+ family-names: Steketee
+ email: anton.steketee@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ orcid: 'https://orcid.org/0009-0002-9081-4106'
+ - given-names: Spencer
+ family-names: Wong
+ email: spencer.wong@anu.edu.au
+ affiliation: Australia’s Climate Simulator (ACCESS-NRI), Australian National University, Canberra, Australia
+ - given-names: Luwei
+ family-names: Yang
+ email: Luwei.Yang@anu.edu.au
+ affiliation: Research School of Earth Sciences, Australian National University
+identifiers:
+ - description: "The concept DOI of all ACCESS-OM3 configurations."
+ type: doi
+ value: 10.5281/zenodo.16294824
+ - description: "The versioned DOI"
+ type: doi
+ value: 10.5281/zenodo.17981800
+repository-code: 'https://github.com/ACCESS-NRI/access-om3-configs'
+url: 'https://access-om3-configs.access-hive.org.au/'
+repository-artifact: >-
+ https://github.com/ACCESS-NRI/access-om3-configs/archive/refs/tags/release-MC_25km_jra_iaf+wombatlite-1.0-beta.tar.gz
+abstract: >-
+ This is an initial beta prerelease of a model
+ configuration of ACCESS-OM3. This uses a release of the
+ ACCESS-OM3 software (version 2026.05.002), a global grid
+ with 25km nominal resolution, bathymetry generated from
+ GEBCO 2024 and initial conditions generated from WOA2023.
+ Interannual Forcing (IAF) from the
+ JRA55-do v1.6 reanalysis is used as input data.
+
+ This configuration also includes the WOMBATlite ocean
+ biogeochemistry model with time-varying, globally-
+ averaged atmospheric CO2 forcing. Initial WOMBATlite
+ prognostic tracer concentrations are:
+ - no3, o2: from WOA23
+ - dic, alk: from GLODAPv2 2016b
+ - fe: from Huang et al. 2022 (DOI: 10.5281/zenodo.6994318)
+ - remaining tracers: set to constant values
+
+ ACCESS-OM3 is the third generation of the ACCESS global
+ ocean-seaice model. It uses up to date releases of the
+ MOM6 ocean model and CICE6 sea-ice model. It is the first
+ ACCESS model release using CMEPS (Community Mediator for
+ Earth Prediction Systems), built on top of NUOPC (
+ National Unified Operational Prediction Capability),
+ infrastructure to connect these model components.
+license: CC-BY-4.0
+version: release-MC_25km_jra_iaf+wombatlite-1.0-beta
+date-released: "2026-07-14"
+keywords:
+ - access-om3
+ - climate
+ - model
+ - bgc
+ - "ocean - sea ice"
+ - CICE
+ - MOM6
+ - NUOPC
+ - ESMF
+ - WOMBAT
diff --git a/MOM_input b/MOM_input
index a01f6d9..27098c5 100644
--- a/MOM_input
+++ b/MOM_input
@@ -17,40 +17,59 @@ FATAL_UNUSED_PARAMS = True ! [Boolean] default = False
! This section contains non default layout parameters which are set.
! ------------------------
! === module MOM_domains ===
-AUTO_MASKTABLE = True ! [Boolean] default = False
- ! Turn on automatic mask table generation to eliminate land blocks.
-AUTO_IO_LAYOUT_FAC = 6 ! default = 0
- ! When AUTO_MASKTABLE is enabled, io layout is calculated by performing integer
- ! division of the runtime-determined domain layout with this factor. If the
- ! factor is set to 0 (default), the io layout is set to 1,1.
+NONBLOCKING_UPDATES = True ! [Boolean] default = False
+ ! If true, non-blocking halo updates may be used.
+MASKTABLE = "./auxiliary_input/mask_table.1026.72x48" ! default = "MOM_mask_table"
+ ! A text file to specify n_mask, layout and mask_list. This feature masks out
+ ! processors that contain only land points. The first line of mask_table is the
+ ! number of regions to be masked out. The second line is the layout of the model
+ ! and must be consistent with the actual model layout. The following (n_mask)
+ ! lines give the logical positions of the processors that are masked out. The
+ ! mask_table can be created by tools like check_mask. The following example of
+ ! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6
+ ! layout:
+ ! 2
+ ! 4,6
+ ! 1,2
+ ! 3,6
+LAYOUT = 72, 48 !
+ ! The processor layout that was actually used.
+IO_LAYOUT = 9, 6 ! default = 1, 1
+ ! The processor layout to be used, or 0,0 to automatically set the io_layout to
+ ! be the same as the layout.
! This section is formatted the same as the MOM_parameter_short.doc output file.
! ------------------------
! This file was written by the model and records the non-default parameters used at run-time.
! === module MOM ===
+USE_CONTEMP_ABSSAL = True ! [Boolean] default = False
+ ! If true, the prognostics T&S are the conservative temperature and absolute
+ ! salinity. Care should be taken to convert them to potential temperature and
+ ! practical salinity before exchanging them with the coupler and/or reporting
+ ! T&S diagnostics.
USE_REGRIDDING = True ! [Boolean] default = False
! If True, use the ALE algorithm (regridding/remapping). If False, use the
! layered isopycnal algorithm.
-THICKNESSDIFFUSE = True ! [Boolean] default = False
- ! If true, isopycnal surfaces are diffused with a Laplacian coefficient of KHTH.
-THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False
- ! If true, do thickness diffusion or interface height smoothing before dynamics.
- ! This is only used if THICKNESSDIFFUSE or APPLY_INTERFACE_FILTER is true.
DT = 900.0 ! [s]
! The (baroclinic) dynamics time step. The time-step that is actually used will
! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode
! or the coupling timestep in coupled mode.)
DT_THERM = 7200.0 ! [s] default = 900.0
- ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be
- ! an integer multiple of DT and less than the forcing or coupling time-step,
- ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer
- ! multiple of the coupling timestep. By default DT_THERM is set to DT.
+ ! The thermodynamic time step. Ideally DT_THERM should be an integer multiple of
+ ! DT and of DT_TRACER_ADVECT and less than the forcing or coupling time-step.
+ ! However, if THERMO_SPANS_COUPLING is true, DT_THERM can be an integer multiple
+ ! of the coupling timestep. By default DT_THERM is set to DT.
THERMO_SPANS_COUPLING = True ! [Boolean] default = False
- ! If true, the MOM will take thermodynamic and tracer timesteps that can be
- ! longer than the coupling timestep. The actual thermodynamic timestep that is
- ! used in this case is the largest integer multiple of the coupling timestep
- ! that is less than or equal to DT_THERM.
+ ! If true, the MOM will take thermodynamic timesteps that can be longer than the
+ ! coupling timestep. The actual thermodynamic timestep that is used in this case
+ ! is the largest integer multiple of the coupling timestep that is less than or
+ ! equal to DT_THERM.
+THICKNESSDIFFUSE = True ! [Boolean] default = False
+ ! If true, isopycnal surfaces are diffused with a Laplacian coefficient of KHTH.
+THICKNESSDIFFUSE_FIRST = True ! [Boolean] default = False
+ ! If true, do thickness diffusion or interface height smoothing before dynamics.
+ ! This is only used if THICKNESSDIFFUSE or APPLY_INTERFACE_FILTER is true.
HFREEZE = 10.0 ! [m] default = -1.0
! If HFREEZE > 0, melt potential will be computed. The actual depth over which
! melt potential is computed will be min(HFREEZE, OBLD), where OBLD is the
@@ -72,9 +91,12 @@ C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963
! The heat capacity of sea water, approximated as a constant. This is only used
! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10
! definition of conservative temperature.
-USE_PSURF_IN_EOS = False ! [Boolean] default = True
- ! If true, always include the surface pressure contributions in equation of
- ! state calculations.
+NONBLOCKING_P_SURF_BUG = False ! [Boolean] default = True
+ ! If true, recover a bug in which the non-blocking halo update of the surface
+ ! pressure is not completed before the halo points of forces%p_surf are copied
+ ! into tv%p_surf, so that those halo points hold the surface pressure from the
+ ! previous coupling step, or zeros on the first step after a restart. This is
+ ! only used if NONBLOCKING_UPDATES and USE_PSURF_IN_EOS are true
CHECK_BAD_SURFACE_VALS = True ! [Boolean] default = False
! If true, check the surface state for ridiculous values.
BAD_VAL_SSH_MAX = 50.0 ! [m] default = 20.0
@@ -89,8 +111,12 @@ BAD_VAL_SST_MAX = 55.0 ! [deg C] default = 45.0
BAD_VAL_SST_MIN = -3.0 ! [deg C] default = -2.1
! The value of SST below which a bad value message is triggered, if
! CHECK_BAD_SURFACE_VALS is true.
-SAVE_INITIAL_CONDS = True ! [Boolean] default = False
- ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE.
+WRITE_GEOM = 2 ! default = 1
+ ! If =0, never write the geometry and vertical grid files. If =1, write the
+ ! geometry and vertical grid files only for a new simulation. If =2, always
+ ! write the geometry and vertical grid files. Other values are invalid.
+GEOM_FILE = "access-om3.mom6.geometry.nc" ! default = "ocean_geometry"
+ ! The file into which to write the ocean geometry.
! === module MOM_domains ===
TRIPOLAR_N = True ! [Boolean] default = False
@@ -99,13 +125,11 @@ TRIPOLAR_N = True ! [Boolean] default = False
NIGLOBAL = 1440 !
! The total number of thickness grid points in the x-direction in the physical
! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time.
-NJGLOBAL = 1142 !
+NJGLOBAL = 1152 !
! The total number of thickness grid points in the y-direction in the physical
! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time.
! === module MOM_fixed_initialization ===
-INPUTDIR = "./INPUT/" ! default = "."
- ! The directory in which input files are found.
! === module MOM_grid_init ===
GRID_CONFIG = "mosaic" !
@@ -116,7 +140,7 @@ GRID_CONFIG = "mosaic" !
! cartesian - use a (flat) Cartesian grid.
! spherical - use a simple spherical grid.
! mercator - use a Mercator spherical grid.
-GRID_FILE = "ocean_hgrid.nc" !
+GRID_FILE = "./INPUT/ocean_hgrid.nc" !
! Name of the file from which to read horizontal grid data.
RAD_EARTH = 6.371229E+06 ! [m] default = 6.378E+06
! The radius of the Earth.
@@ -147,8 +171,26 @@ TOPO_CONFIG = "file" !
! Phillips - ACC-like idealized topography used in the Phillips config.
! dense - Denmark Strait-like dense water formation and overflow.
! USER - call a user modified routine.
+TOPO_FILE = "./INPUT/topog.nc" ! default = "topog.nc"
+ ! The file from which the bathymetry is read.
MAXIMUM_DEPTH = 6000.0 ! [m]
! The maximum depth of the ocean.
+CHANNEL_CONFIG = "list" ! default = "none"
+ ! A parameter that determines which set of channels are
+ ! restricted to specific widths. Options are:
+ ! none - All channels have the grid width.
+ ! global_1deg - Sets 16 specific channels appropriate
+ ! for a 1-degree model, as used in CM2G.
+ ! list - Read the channel locations and widths from a
+ ! text file, like MOM_channel_list in the MOM_SIS
+ ! test case.
+ ! file - Read open face widths everywhere from a
+ ! NetCDF file on the model grid.
+CHANNEL_LIST_FILE = "./auxiliary_input/MOM_channel_list" ! default = "MOM_channel_list"
+ ! The file from which the list of narrowed channels is read.
+FATAL_UNUSED_CHANNEL_WIDTHS = True ! [Boolean] default = False
+ ! If true, trigger a fatal error if there are any channel widths in
+ ! CHANNEL_LIST_FILE that do not cause any open face widths to change.
! === module MOM_verticalGrid ===
! Parameters providing information about the vertical grid.
@@ -156,21 +198,37 @@ NK = 75 ! [nondim]
! The number of model layers.
! === module MOM_EOS ===
-EQN_OF_STATE = "WRIGHT_REDUCED" ! default = "WRIGHT"
+EQN_OF_STATE = "ROQUET_RHO" ! default = "WRIGHT_FULL"
! EQN_OF_STATE determines which ocean equation of state should be used.
! Currently, the valid choices are "LINEAR", "UNESCO", "JACKETT_MCD", "WRIGHT",
! "WRIGHT_REDUCED", "WRIGHT_FULL", "NEMO", "ROQUET_RHO", "ROQUET_SPV" and
! "TEOS10". This is only used if USE_EOS is true.
-DTFREEZE_DP = -7.75E-08 ! [degC Pa-1] default = 0.0
- ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential
- ! temperature with pressure.
+TFREEZE_FORM = "TEOS_POLY" ! default = "TEOS10"
+ ! TFREEZE_FORM determines which expression should be used for the freezing
+ ! point. Currently, the valid choices are "LINEAR", "MILLERO_78", "TEOS_POLY",
+ ! "TEOS10"
+
+! === module MOM_restart ===
+PARALLEL_RESTARTFILES = True ! [Boolean] default = False
+ ! If true, the IO layout is used to group processors that write to the same
+ ! restart file or each processor writes its own (numbered) restart file. If
+ ! false, a single restart file is generated combining output from all PEs.
! === module MOM_tracer_flow_control ===
USE_IDEAL_AGE_TRACER = True ! [Boolean] default = False
! If true, use the ideal_age_example tracer package.
+USE_generic_tracer = True ! [Boolean] default = False
+ ! If true and _USE_GENERIC_TRACER is defined as a preprocessor macro, use the
+ ! MOM_generic_tracer packages.
! === module ideal_age_example ===
+! === module register_MOM_generic_tracer ===
+
+! === module MOM_fixed_initialization ===
+
+! === module MOM_grid_init ===
+
! === module MOM_coord_initialization ===
REGRIDDING_COORDINATE_MODE = "ZSTAR" ! default = "LAYER"
! Coordinate mode for vertical regridding. Choose among the following
@@ -182,7 +240,7 @@ REGRIDDING_COORDINATE_MODE = "ZSTAR" ! default = "LAYER"
! HYCOM1 - HyCOM-like hybrid coordinate
! HYBGEN - Hybrid coordinate from the Hycom hybgen code
! ADAPTIVE - optimize for smooth neutral density surfaces
-ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "UNIFORM"
+ALE_COORDINATE_CONFIG = "FILE:./INPUT/ocean_vgrid.nc,interfaces=zeta" ! default = "UNIFORM"
! Determines how to specify the coordinate resolution. Valid options are:
! PARAM - use the vector-parameter ALE_RESOLUTION
! UNIFORM[:N] - uniformly distributed
@@ -196,8 +254,23 @@ ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "UNIFO
! FNC1:string - FNC1:dz_min,H_total,power,precision
! HYBRID:string - read from a file. The string specifies
! the filename and two variable names, separated
- ! by a comma or space, for sigma-2 and dz. e.g.
- ! HYBRID:vgrid.nc,sigma2,dz
+ ! by a comma or space, for sigma-2 and dz.
+ ! e.g. HYBRID:vgrid.nc,sigma2,dz
+ ! HYBRID_3D:string - read from a file. The string specifies
+ ! the filename and two 3D variable names, separated
+ ! by a comma or space, for sigma-2 and dz. The
+ ! latter can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_3D:vgrid.nc,sigma2,dz
+ ! HYBRID_MAP:string - read from a file. The string specifies
+ ! the filename and three variable names, separated
+ ! by a comma or space, for map, sigma-2 and dz.
+ ! Map is a spatial index array with, maxval(map)=N,
+ ! and the others are 2D arrays containing N profiles.
+ ! Map typically contains integer values, but it can
+ ! contain real values, I+w, which imply using
+ ! the weighted sum of profiles I and I+1.
+ ! Dz can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_MAP:vgrid.nc,map,sigma2,dz
!ALE_RESOLUTION = 1.0825614929199219, 1.1963462829589844, 1.322089672088623, 1.4610481262207031, 1.614609718322754, 1.784308910369873, 1.9718408584594727, 2.1790781021118164, 2.4080896377563477, 2.661160469055176, 2.940814971923828, 3.249845504760742, 3.591329574584961, 3.968667984008789, 4.385614395141602, 4.846321105957031, 5.355350494384766, 5.917766571044922, 6.539115905761719, 7.225547790527344, 7.983818054199219, 8.821372985839844, 9.746376037597656, 10.767845153808594, 11.895652770996094, 13.140586853027344, 14.514511108398438, 16.030319213867188, 17.7020263671875, 19.544876098632812, 21.575271606445312, 23.810821533203125, 26.270294189453125, 28.973419189453125, 31.94091796875, 35.194000244140625, 38.75390625, 42.641632080078125, 46.876739501953125, 51.476593017578125, 56.45489501953125, 61.82025146484375, 67.5743408203125, 73.70965576171875, 80.207763671875, 87.03759765625, 94.1534423828125, 101.4951171875, 108.9879150390625, 116.5452880859375, 124.0714111328125, 131.4671630859375, 138.6346435546875, 145.484130859375, 151.938232421875, 157.93701171875, 163.439697265625, 168.42431640625, 172.8876953125, 176.842041015625, 180.3125, 183.33154296875, 185.938720703125, 188.175048828125, 190.08251953125, 191.701171875
REMAPPING_SCHEME = "PPM_H4" ! default = "PLM"
! This sets the reconstruction scheme used for vertical remapping for all
@@ -223,12 +296,10 @@ INIT_LAYERS_FROM_Z_FILE = True ! [Boolean] default = False
! Z-space file on a latitude-longitude grid.
! === module MOM_initialize_layers_from_Z ===
-TEMP_SALT_Z_INIT_FILE = "ocean_temp_salt.res.nc" ! default = "temp_salt_z.nc"
+TEMP_SALT_Z_INIT_FILE = "./INPUT/woa23_ts_01_mom.nc" ! default = "temp_salt_z.nc"
! The name of the z-space input file used to initialize temperatures (T) and
! salinities (S). If T and S are not in the same file, TEMP_Z_INIT_FILE and
! SALT_Z_INIT_FILE must be set.
-Z_INIT_FILE_PTEMP_VAR = "temp" ! default = "ptemp"
- ! The name of the potential temperature variable in TEMP_Z_INIT_FILE.
Z_INIT_ALE_REMAPPING = True ! [Boolean] default = False
! If True, then remap straight to model coordinate from file.
Z_INIT_REMAP_GENERAL = True ! [Boolean] default = False
@@ -238,17 +309,16 @@ TEMP_SALT_INIT_VERTICAL_REMAP_ONLY = True ! [Boolean] default = False
! If true, initial conditions are on the model horizontal grid. Extrapolation
! over missing ocean values is done using an ICE-9 procedure with vertical ALE
! remapping .
-Z_INIT_REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = True
- ! If true, use the OM4 remapping-via-subcells algorithm for initialization. See
- ! REMAPPING_USE_OM4_SUBCELLS for more details. We recommend setting this option
- ! to false.
! === module MOM_diag_mediator ===
-DIAG_REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = True
- ! If true, use the OM4 remapping-via-subcells algorithm for diagnostics. See
- ! REMAPPING_USE_OM4_SUBCELLS for details. We recommend setting this option to
- ! false.
-DIAG_COORD_DEF_Z = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "WOA09"
+NUM_DIAG_COORDS = 2 ! default = 1
+ ! The number of diagnostic vertical coordinates to use. For each coordinate, an
+ ! entry in DIAG_COORDS must be provided.
+DIAG_COORDS = "z Z ZSTAR", "rho2 RHO2 RHO" !
+ ! A list of string tuples associating diag_table modules to a coordinate
+ ! definition used for diagnostics. Each string is of the form
+ ! "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME".
+DIAG_COORD_DEF_Z = "FILE:./INPUT/ocean_vgrid.nc,interfaces=zeta" ! default = "WOA09"
! Determines how to specify the coordinate resolution. Valid options are:
! PARAM - use the vector-parameter DIAG_COORD_RES_Z
! UNIFORM[:N] - uniformly distributed
@@ -262,8 +332,54 @@ DIAG_COORD_DEF_Z = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "WOA09"
! FNC1:string - FNC1:dz_min,H_total,power,precision
! HYBRID:string - read from a file. The string specifies
! the filename and two variable names, separated
- ! by a comma or space, for sigma-2 and dz. e.g.
- ! HYBRID:vgrid.nc,sigma2,dz
+ ! by a comma or space, for sigma-2 and dz.
+ ! e.g. HYBRID:vgrid.nc,sigma2,dz
+ ! HYBRID_3D:string - read from a file. The string specifies
+ ! the filename and two 3D variable names, separated
+ ! by a comma or space, for sigma-2 and dz. The
+ ! latter can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_3D:vgrid.nc,sigma2,dz
+ ! HYBRID_MAP:string - read from a file. The string specifies
+ ! the filename and three variable names, separated
+ ! by a comma or space, for map, sigma-2 and dz.
+ ! Map is a spatial index array with, maxval(map)=N,
+ ! and the others are 2D arrays containing N profiles.
+ ! Map typically contains integer values, but it can
+ ! contain real values, I+w, which imply using
+ ! the weighted sum of profiles I and I+1.
+ ! Dz can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_MAP:vgrid.nc,map,sigma2,dz
+DIAG_COORD_DEF_RHO2 = "RFNC1:76,999.5,1020.,1034.1,3.1,1041.,0.002" ! default = "WOA09"
+ ! Determines how to specify the coordinate resolution. Valid options are:
+ ! PARAM - use the vector-parameter DIAG_COORD_RES_RHO2
+ ! UNIFORM[:N] - uniformly distributed
+ ! FILE:string - read from a file. The string specifies
+ ! the filename and variable name, separated
+ ! by a comma or space, e.g. FILE:lev.nc,dz
+ ! or FILE:lev.nc,interfaces=zw
+ ! WOA09[:N] - the WOA09 vertical grid (approximately)
+ ! WOA09INT[:N] - layers spanned by the WOA09 depths
+ ! WOA23INT[:N] - layers spanned by the WOA23 depths
+ ! FNC1:string - FNC1:dz_min,H_total,power,precision
+ ! HYBRID:string - read from a file. The string specifies
+ ! the filename and two variable names, separated
+ ! by a comma or space, for sigma-2 and dz.
+ ! e.g. HYBRID:vgrid.nc,sigma2,dz
+ ! HYBRID_3D:string - read from a file. The string specifies
+ ! the filename and two 3D variable names, separated
+ ! by a comma or space, for sigma-2 and dz. The
+ ! latter can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_3D:vgrid.nc,sigma2,dz
+ ! HYBRID_MAP:string - read from a file. The string specifies
+ ! the filename and three variable names, separated
+ ! by a comma or space, for map, sigma-2 and dz.
+ ! Map is a spatial index array with, maxval(map)=N,
+ ! and the others are 2D arrays containing N profiles.
+ ! Map typically contains integer values, but it can
+ ! contain real values, I+w, which imply using
+ ! the weighted sum of profiles I and I+1.
+ ! Dz can be FNC1:string which is used everywhere.
+ ! e.g. HYBRID_MAP:vgrid.nc,map,sigma2,dz
! === module MOM_MEKE ===
USE_MEKE = True ! [Boolean] default = False
@@ -275,12 +391,20 @@ MEKE_GMCOEFF = 1.0 ! [nondim] default = -1.0
! conversion is not used or calculated.
MEKE_BGSRC = 1.0E-13 ! [W kg-1] default = 0.0
! A background energy source for MEKE.
+MEKE_KHTH_FAC = 0.3 ! [nondim] default = 0.0
+ ! A factor that maps MEKE%Kh to KhTh.
+MEKE_KHTR_FAC = 0.3 ! [nondim] default = 0.0
+ ! A factor that maps MEKE%Kh to KhTr.
MEKE_KHMEKE_FAC = 1.0 ! [nondim] default = 0.0
! A factor that maps MEKE%Kh to Kh for MEKE itself.
-MEKE_ALPHA_RHINES = 0.15 ! [nondim] default = 0.05
+MEKE_VISCOSITY_COEFF_KU = 0.6 ! [nondim] default = 0.0
+ ! If non-zero, is the scaling coefficient in the expression forviscosity used to
+ ! parameterize harmonic lateral momentum mixing byunresolved eddies represented
+ ! by MEKE. Can be negative torepresent backscatter from the unresolved eddies.
+MEKE_ALPHA_RHINES = 0.15 ! [nondim] default = 0.0
! If positive, is a coefficient weighting the Rhines scale in the expression for
! mixing length used in MEKE-derived diffusivity.
-MEKE_ALPHA_EADY = 0.15 ! [nondim] default = 0.05
+MEKE_ALPHA_EADY = 0.15 ! [nondim] default = 0.0
! If positive, is a coefficient weighting the Eady length scale in the
! expression for mixing length used in MEKE-derived diffusivity.
@@ -296,6 +420,9 @@ RESOLN_SCALED_KH = True ! [Boolean] default = False
RESOLN_SCALED_KHTH = True ! [Boolean] default = False
! If true, the interface depth diffusivity is scaled away when the first
! baroclinic deformation radius is well resolved.
+KHTH_USE_EBT_STRUCT = True ! [Boolean] default = False
+ ! If true, uses the equivalent barotropic structure as the vertical structure of
+ ! thickness diffusivity.
KHTR_SLOPE_CFF = 0.25 ! [nondim] default = 0.0
! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer
! diffusivity
@@ -303,19 +430,10 @@ USE_STORED_SLOPES = True ! [Boolean] default = False
! If true, the isopycnal slopes are calculated once and stored for re-use. This
! uses more memory but avoids calling the equation of state more times than
! should be necessary.
-INTERPOLATE_RES_FN = False ! [Boolean] default = True
- ! If true, interpolate the resolution function to the velocity points from the
- ! thickness points; otherwise interpolate the wave speed and calculate the
- ! resolution function independently at each point.
-GILL_EQUATORIAL_LD = True ! [Boolean] default = False
- ! If true, uses Gill's definition of the baroclinic equatorial deformation
- ! radius, otherwise, if false, use Pedlosky's definition. These definitions
- ! differ by a factor of 2 in front of the beta term in the denominator. Gill's
- ! is the more appropriate definition.
-EBT_REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = True
- ! If true, use the OM4 remapping-via-subcells algorithm for calculating EBT
- ! structure. See REMAPPING_USE_OM4_SUBCELLS for details. We recommend setting
- ! this option to false.
+KH_RES_FN_POWER = 3 ! default = 2
+ ! The power of dx/Ld in the Kh resolution function. Any positive integer may be
+ ! used, although even integers are more efficient to calculate. Setting this
+ ! greater than 100 results in a step-function being used.
! === module MOM_set_visc ===
CHANNEL_DRAG = True ! [Boolean] default = False
@@ -338,19 +456,21 @@ BBL_THICK_MIN = 0.1 ! [m] default = 0.0
KV = 0.0 ! [m2 s-1]
! The background kinematic viscosity in the interior. The molecular value, ~1e-6
! m2 s-1, may be used.
+
! === module MOM_thickness_diffuse ===
KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8
! The maximum value of the local diffusive CFL ratio that is permitted for the
! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered
! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based
! models.
+KHTH_USE_FGNV_STREAMFUNCTION = True ! [Boolean] default = False
+ ! If true, use the streamfunction formulation of Ferrari et al., 2010, which
+ ! effectively emphasizes graver vertical modes by smoothing in the vertical.
+FGNV_FILTER_SCALE = 0.1 ! [nondim] default = 1.0
+ ! A coefficient scaling the vertical smoothing term in the Ferrari et al., 2010,
+ ! streamfunction formulation.
! === module MOM_dynamics_split_RK2 ===
-VISC_REM_BUG = False ! [Boolean] default = True
- ! If true, visc_rem_[uv] in split mode is incorrectly calculated or accounted
- ! for in two places. This parameter controls the defaults of two individual
- ! flags, VISC_REM_TIMESTEP_BUG in MOM_dynamics_split_RK2(b) and
- ! VISC_REM_BT_WEIGHT_BUG in MOM_barotropic.
! === module MOM_continuity_PPM ===
ETA_TOLERANCE = 1.0E-06 ! [m] default = 3.75E-09
@@ -359,8 +479,23 @@ ETA_TOLERANCE = 1.0E-06 ! [m] default = 3.75E-09
! total tolerance for SSH is 4 times this value. The default is
! 0.5*NK*ANGSTROM, and this should not be set less than about
! 10^-15*MAXIMUM_DEPTH.
+VELOCITY_TOLERANCE = 1.0E-04 ! [m s-1] default = 3.0E+08
+ ! The tolerance for barotropic velocity discrepancies between the barotropic
+ ! solution and the sum of the layer thicknesses.
! === module MOM_CoriolisAdv ===
+CORIOLIS_SCHEME = "SADOURNY75_ENSTRO" ! default = "SADOURNY75_ENERGY"
+ ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid
+ ! values are:
+ ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons.
+ ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990
+ ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons.
+ ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst.
+ ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with
+ ! Arakawa & Hsu and Sadourny energy
+ ! WENOVI5TH_PV_ENSTRO - 5th-order WENO PV enstrophy
+ ! WENOVI3RD_PV_ENSTRO - 3rd-order WENO PV enstrophy
+ ! WENOVI7TH_PV_ENSTRO - 7th-order WENO PV enstrophy
BOUND_CORIOLIS = True ! [Boolean] default = False
! If true, the Coriolis terms at u-points are bounded by the four estimates of
! (f+rv)v from the four neighboring v-points, and similarly at v-points. This
@@ -379,6 +514,13 @@ MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False
! === module MOM_hor_visc ===
LAPLACIAN = True ! [Boolean] default = False
! If true, use a Laplacian horizontal viscosity.
+KH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0
+ ! The velocity scale which is multiplied by the grid spacing to calculate the
+ ! Laplacian viscosity. The final viscosity is the largest of this scaled
+ ! viscosity, the Smagorinsky and Leith viscosities, and KH.
+KH_SIN_LAT = 2000.0 ! [m2 s-1] default = 0.0
+ ! The amplitude of a latitudinally-dependent background viscosity of the form
+ ! KH_SIN_LAT*(SIN(LAT)**KH_PWR_OF_SINE).
AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0
! The velocity scale which is multiplied by the cube of the grid spacing to
! calculate the biharmonic viscosity. The final viscosity is the largest of this
@@ -387,24 +529,11 @@ SMAGORINSKY_AH = True ! [Boolean] default = False
! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity.
SMAG_BI_CONST = 0.06 ! [nondim] default = 0.0
! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06.
-BACKSCATTER_UNDERBOUND = False ! [Boolean] default = True
- ! If true, the bounds on the biharmonic viscosity are allowed to increase where
- ! the Laplacian viscosity is negative (due to backscatter parameterizations)
- ! beyond the largest timestep-dependent stable values of biharmonic viscosity
- ! when no Laplacian viscosity is applied. The default is true for historical
- ! reasons, but this option probably should not be used because it can contribute
- ! to numerical instabilities.
-FRICTWORK_BUG = False ! [Boolean] default = True
- ! If true, retain an answer-changing bug in calculating the FrictWork, which
- ! cancels the h in thickness flux and the h at velocity point. This isnot
- ! recommended.
! === module MOM_vert_friction ===
HMIX_FIXED = 0.5 ! [m]
! The prescribed depth over which the near-surface viscosity and diffusivity are
! elevated when the bulk mixed layer is not used.
-MAXVEL = 6.0 ! [m s-1] default = 3.0E+08
- ! The maximum velocity allowed before the velocity components are truncated.
CFL_TRUNCATE_RAMP_TIME = 7200.0 ! [s] default = 0.0
! The time over which the CFL truncation value is ramped up at the beginning of
! the run.
@@ -439,35 +568,34 @@ MIXEDLAYER_RESTRAT = True ! [Boolean] default = False
! If true, a density-gradient dependent re-stratifying flow is imposed in the
! mixed layer. Can be used in ALE mode without restriction but in layer mode can
! only be used if BULKMIXEDLAYER is true.
-MLE%USE_BODNER23 = True ! [Boolean] default = False
+MLE%
+USE_BODNER23 = True ! [Boolean] default = False
! If true, use the Bodner et al., 2023, formulation of the re-stratifying
! mixed-layer restratification parameterization. This only works in ALE mode.
-MLE%CR = 0.0175 ! [nondim] default = 0.0
+CR = 0.0175 ! [nondim] default = 0.0
! The efficiency coefficient in eq 27 of Bodner et al., 2023.
-MLE%BLD_DECAYING_TFILTER = 8.64E+04 ! [s] default = 0.0
+BLD_DECAYING_TFILTER = 8.64E+04 ! [s] default = 0.0
! The time-scale for a running-mean filter applied to the boundary layer depth
! (BLD) when the BLD is shallower than the running mean. A value of 0
! instantaneously sets the running mean to the current value of BLD.
-MLE%MLD_DECAYING_TFILTER = 2.592E+06 ! [s] default = 0.0
+MLD_DECAYING_TFILTER = 2.592E+06 ! [s] default = 0.0
! The time-scale for a running-mean filter applied to the time-filtered BLD,
! when the latter is shallower than the running mean. A value of 0
! instantaneously sets the running mean to the current value filtered BLD.
-MLE%MIN_WSTAR2 = 1.0E-09 ! [m2 s-2] default = 1.0E-24
+MIN_WSTAR2 = 1.0E-09 ! [m2 s-2] default = 1.0E-24
! The minimum lower bound to apply to the vertical momentum flux, w'u', in the
! Bodner et al., restratification parameterization. This avoids a
! division-by-zero in the limit when u* and the buoyancy flux are zero. The
! default is less than the molecular viscosity of water times the Coriolis
! parameter a micron away from the equator.
+%MLE
MLE_USE_PBL_MLD = True ! [Boolean] default = False
! If true, the MLE parameterization will use the mixed-layer depth provided by
! the active PBL parameterization. If false, MLE will estimate a MLD based on a
- ! density difference with the surface using the parameter MLE_DENSITY_DIFF.
+ ! density difference with the surface using the parameter MLE_DENSITY_DIFF,
+ ! unless BODNER_DETECT_MLD is true.
! === module MOM_diagnostics ===
-INTWAVE_REMAPPING_USE_OM4_SUBCELLS = False ! [Boolean] default = True
- ! If true, use the OM4 remapping-via-subcells algorithm for calculating EBT
- ! structure. See REMAPPING_USE_OM4_SUBCELLS for details. We recommend setting
- ! this option to false.
! === module MOM_diabatic_driver ===
! The following parameters are used for diabatic processes.
@@ -481,28 +609,7 @@ EPBL_IS_ADDITIVE = False ! [Boolean] default = True
! If true, the diffusivity from ePBL is added to all other diffusivities.
! Otherwise, the larger of kappa-shear and ePBL diffusivities are used.
-! === module MOM_CVMix_KPP ===
-! This is the MOM wrapper to CVMix:KPP
-! See http://cvmix.github.io/
-
-! === module MOM_CVMix_conv ===
-! Parameterization of enhanced mixing due to convection via CVMix
-
! === module MOM_set_diffusivity ===
-BBL_EFFIC = 0.01 ! [nondim] default = 0.2
- ! The efficiency with which the energy extracted by bottom drag drives BBL
- ! diffusion. This is only used if BOTTOMDRAGLAW is true.
-BBL_MIXING_AS_MAX = False ! [Boolean] default = True
- ! If true, take the maximum of the diffusivity from the BBL mixing and the other
- ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added.
-USE_LOTW_BBL_DIFFUSIVITY = True ! [Boolean] default = False
- ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL
- ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL
- ! scheme.
-SIMPLE_TKE_TO_KD = True ! [Boolean] default = False
- ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary
- ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact
- ! energetics for an isopycnal layer-formulation.
! === module MOM_tidal_mixing ===
! Vertical Tidal Mixing Parameterization
@@ -530,13 +637,30 @@ TKE_ITIDE_MAX = 0.1 ! [W m-2] default = 1000.0
READ_TIDEAMP = True ! [Boolean] default = False
! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude
! with INT_TIDE_DISSIPATION.
-H2_FILE = "bottom_roughness.nc" !
+TIDEAMP_FILE = "./INPUT/tideamp.nc" ! default = "tideamp.nc"
+ ! The path to the file containing the spatially varying tidal amplitudes with
+ ! INT_TIDE_DISSIPATION.
+H2_FILE = "./INPUT/bottom_roughness.nc" !
! The path to the file containing the sub-grid-scale topographic roughness
! amplitude with INT_TIDE_DISSIPATION.
+BBL_EFFIC = 0.01 ! [nondim] default = 0.2
+ ! The efficiency with which the energy extracted by bottom drag drives BBL
+ ! diffusion. This is only used if BOTTOMDRAGLAW is true.
+BBL_MIXING_AS_MAX = False ! [Boolean] default = True
+ ! If true, take the maximum of the diffusivity from the BBL mixing and the other
+ ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added.
+USE_LOTW_BBL_DIFFUSIVITY = True ! [Boolean] default = False
+ ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL
+ ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL
+ ! scheme.
+SIMPLE_TKE_TO_KD = True ! [Boolean] default = False
+ ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary
+ ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact
+ ! energetics for an isopycnal layer-formulation.
! === module MOM_bkgnd_mixing ===
! Adding static vertical background mixing coefficients
-KD = 1.5E-05 ! [m2 s-1]
+KD = 0.8E-05 ! [m2 s-1] default = 0.0
! The background diapycnal diffusivity of density in the interior. Zero or the
! molecular value, ~1e-7 m2 s-1, may be used.
KD_MIN = 2.0E-06 ! [m2 s-1] default = 1.5E-07
@@ -563,7 +687,7 @@ USE_JACKSON_PARAM = True ! [Boolean] default = False
! parameterization.
VERTEX_SHEAR = True ! [Boolean] default = False
! If true, do the calculations of the shear-driven mixing at the cell vertices
- ! (i.e., the vorticity points)
+ ! (i.e., the vorticity points).
MAX_RINO_IT = 25 ! [nondim] default = 50
! The maximum number of iterations that may be used to estimate the Richardson
! number driven mixing.
@@ -572,18 +696,25 @@ USE_RESTRICTIVE_TOLERANCE_CHECK = True ! [Boolean] default = False
! is acceptable for the KS_it outer iteration loop. False uses the original
! less restrictive check.
-! === module MOM_CVMix_shear ===
-! Parameterization of shear-driven turbulence via CVMix (various options)
-
-! === module MOM_CVMix_ddiff ===
-! Parameterization of mixing due to double diffusion processes via CVMix
-
! === module MOM_diabatic_aux ===
! The following parameters are used for auxiliary diabatic processes.
PRESSURE_DEPENDENT_FRAZIL = True ! [Boolean] default = False
! If true, use a pressure dependent freezing temperature when making frazil. The
! default is false, which will be faster but is inappropriate with ice-shelf
! cavities.
+DO_RIVERMIX = True ! [Boolean] default = False
+ ! If true, apply additional mixing wherever there is runoff, so that it is mixed
+ ! down to RIVERMIX_DEPTH if the ocean is that deep.
+RIVERMIX_DEPTH = 40.0 ! [m] default = 0.0
+ ! The depth to which rivers are mixed if DO_RIVERMIX is defined.
+VAR_PEN_SW = True ! [Boolean] default = False
+ ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine
+ ! the e-folding depth of incoming short wave radiation.
+CHL_FILE = "./INPUT/chl_globcolour_monthly_clim.nc" !
+ ! CHL_FILE is the file containing chl_a concentrations in the variable CHL_A. It
+ ! is used when VAR_PEN_SW and CHL_FROM_FILE are true.
+CHL_VARNAME = "CHL" ! default = "CHL_A"
+ ! Name of CHL_A variable in CHL_FILE.
! === module MOM_energetic_PBL ===
ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0
@@ -596,14 +727,14 @@ TKE_DECAY = 0.01 ! [nondim] default = 2.5
EPBL_MSTAR_SCHEME = "OM4" ! default = "CONSTANT"
! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are:
! CONSTANT - Use a fixed mstar given by MSTAR
- ! OM4 - Use L_Ekman/L_Obukhov in the sabilizing limit, as in OM4
+ ! OM4 - Use L_Ekman/L_Obukhov in the stabilizing limit, as in OM4
! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018.
MSTAR_CAP = 1.25 ! [nondim] default = -1.0
! If this value is positive, it sets the maximum value of mstar allowed in ePBL.
- ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT).
+ ! (This is not used if EPBL_mstar_scheme = CONSTANT).
MSTAR2_COEF1 = 0.29 ! [nondim] default = 0.3
! Coefficient in computing mstar when rotation and stabilizing effects are both
- ! important (used if EPBL_MSTAR_SCHEME = OM4).
+ ! important (used if EPBL_mstar_scheme = OM4).
MSTAR2_COEF2 = 0.152 ! [nondim] default = 0.085
! Coefficient in computing mstar when only rotation limits the total mixing
! (used if EPBL_MSTAR_SCHEME = OM4)
@@ -614,9 +745,6 @@ NSTAR = 0.06 ! [nondim] default = 0.2
MSTAR_CONV_ADJ = 0.667 ! [nondim] default = 0.0
! Coefficient used for reducing mstar during convection due to reduction of
! stable density gradient.
-USE_MLD_ITERATION = True ! [Boolean] default = False
- ! A logical that specifies whether or not to use the distance to the bottom of
- ! the actively turbulent boundary layer to help set the EPBL length scale.
EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1
! A scale for the mixing length in the transition layer at the edge of the
! boundary layer as a fraction of the boundary layer thickness.
@@ -624,7 +752,7 @@ MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0
! The exponent applied to the ratio of the distance to the MLD and the MLD depth
! which determines the shape of the mixing length. This is only used if
! USE_MLD_ITERATION is True.
-USE_LA_LI2016 = True ! [nondim] default = False
+USE_LA_LI2016 = True ! [Boolean] default = False
! A logical to use the Li et al. 2016 (submitted) formula to determine the
! Langmuir number.
EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE"
@@ -633,12 +761,12 @@ EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE"
! NONE - Do not do any extra mixing due to Langmuir turbulence
! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir
! turbulence
- ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other
+ ! ADDITIVE - Add a Langmuir turbulence contribution to mstar to other
! contributions
LT_ENHANCE_COEF = 0.044 ! [nondim] default = 0.447
! Coefficient for Langmuir enhancement of mstar
LT_ENHANCE_EXP = -1.5 ! [nondim] default = -1.33
- ! Exponent for Langmuir enhancementt of mstar
+ ! Exponent for Langmuir enhancement of mstar
LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87
! Coefficient for modification of Langmuir number due to MLD approaching Ekman
! depth.
@@ -650,11 +778,8 @@ LT_MOD_LAC5 = 0.22 ! [nondim] default = 0.95
! unstable Obukhov depth.
! === module MOM_opacity ===
-PEN_SW_SCALE = 15.0 ! [m] default = 0.0
- ! The vertical absorption e-folding depth of the penetrating shortwave
- ! radiation.
-PEN_SW_FRAC = 0.42 ! [nondim] default = 0.0
- ! The fraction of the shortwave radiation that penetrates below the surface.
+PEN_SW_NBANDS = 3 ! default = 1
+ ! The number of bands of penetrating shortwave radiation.
! === module MOM_tracer_advect ===
TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM"
@@ -664,22 +789,29 @@ TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM"
! PPM - Piecewise Parabolic Method (Colella-Woodward)
! === module MOM_tracer_hor_diff ===
+KHTR = 50.0 ! [m2 s-1] default = 0.0
+ ! The background along-isopycnal tracer diffusivity.
CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False
! If true, use enough iterations the diffusion to ensure that the diffusive
! equivalent of the CFL limit is not violated. If false, always use the greater
! of 1 or MAX_TR_DIFFUSION_CFL iteration.
+MAX_TR_DIFFUSION_CFL = 2.0 ! [nondim] default = -1.0
+ ! If positive, locally limit the along-isopycnal tracer diffusivity to keep the
+ ! diffusive CFL locally at or below this value. The number of diffusive
+ ! iterations is often this value or the next greater integer.
! === module MOM_neutral_diffusion ===
! This module implements neutral diffusion of tracers
-
-! === module MOM_hor_bnd_diffusion ===
-! This module implements horizontal diffusion of tracers near boundaries
+USE_NEUTRAL_DIFFUSION = True ! [Boolean] default = False
+ ! If true, enables the neutral diffusion module.
! === module MOM_sum_output ===
MAXTRUNC = 10000 ! [truncations save_interval-1] default = 0
! The run will be stopped, and the day set to a very large value if the velocity
! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0
! to stop if there is any truncation of velocities.
+MAXVEL = 6.0 ! [m s-1] default = 3.0E+08
+ ! The maximum velocity allowed before the velocity components are truncated.
! === module ocean_stochastics_init ===
@@ -696,26 +828,13 @@ RESTORE_SALINITY = True ! [Boolean] default = False
! drives sea-surface salinity toward specified values.
! === module MOM_surface_forcing_nuopc ===
-MAX_P_SURF = 0.0 ! [Pa] default = -1.0
- ! The maximum surface pressure that can be exerted by the atmosphere and
- ! floating sea-ice or ice shelves. This is needed because the FMS coupling
- ! structure does not limit the water that can be frozen out of the ocean and the
- ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a
- ! negative value is used.
-USE_RIGID_SEA_ICE = True ! [Boolean] default = False
- ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that
- ! resist vertical motion.
-SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0
- ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit
- ! rigidity
-
LATENT_HEAT_FUSION = 3.337E+05 ! [J/kg] default = 3.34E+05
! The latent heat of fusion.
LATENT_HEAT_VAPORIZATION = 2.501E+06 ! [J/kg] default = 2.5E+06
! The latent heat of fusion.
-ADJUST_NET_FRESH_WATER_TO_ZERO = True ! [Boolean] default = False
- ! If true, adjusts the net fresh-water forcing seen by the ocean (including
- ! restoring) to zero.
+ADJUST_NET_SRESTORE_BY_SCALING = True ! [Boolean] default = False
+ ! If true, adjustments to salt restoring to achieve zero net are made by scaling
+ ! values without moving the zero contour.
WIND_STAGGER = "A" ! default = "C"
! A case-insensitive character string to indicate the staggering of the input
! wind stress field. Valid values are 'A', 'B', or 'C'.
@@ -725,8 +844,21 @@ ENTHALPY_FROM_COUPLER = True ! [Boolean] default = False
FLUXCONST = 0.11 ! [m day-1] default = 0.0
! The constant that relates the restoring surface fluxes to the relative surface
! anomalies (akin to a piston velocity). Note the non-MKS units.
-SALT_RESTORE_FILE = "salt_sfc_restore.nc" ! default = "salt_restore.nc"
+SALT_RESTORE_FILE = "./INPUT/salt_sfc_restore.nc" ! default = "salt_restore.nc"
! A file in which to find the surface salinity to use for restoring.
+SALT_RESTORE_VARIABLE = "asalt" ! default = "salt"
+ ! The name of the surface salinity variable to read from SALT_RESTORE_FILE for
+ ! restoring salinity.
SRESTORE_AS_SFLUX = True ! [Boolean] default = False
! If true, the restoring of salinity is applied as a salt flux instead of as a
! freshwater flux.
+MAX_DELTA_SRESTORE = 0.5 ! [PSU or g kg-1] default = 999.0
+ ! The maximum salinity difference used in restoring terms.
+USE_RIGID_SEA_ICE = True ! [Boolean] default = False
+ ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that
+ ! resist vertical motion.
+SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0
+ ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit
+ ! rigidity
+
+! === module MOM_restart ===
diff --git a/README.md b/README.md
index dade9ee..bf01ac4 100644
--- a/README.md
+++ b/README.md
@@ -1,17 +1,3 @@
-# MOM6-CICE6 025 deg JRA55-do RYF ACCESS-OM3 configuration
-
-**WARNING: This configuration is still under development and should not be used for production.**
-
See [`main` branch
-README](https://github.com/COSIMA/MOM6-CICE6/blob/main/README.md) for usage
+README](https://github.com/ACCESS-NRI/access-om3-configs/blob/main/README.md) for usage
information.
-
-## Features
-
-- data atmosphere (DATM) = JRA55-do v1-4, RYF 1990-1991
-- data runoff (DROF) = JRA55-do v1-4, RYF 1990-1991
-- tripolar grid
-
-## Requirements
-
-This configuration requires [Payu](https://github.com/payu-org/payu) > v1.1.3 to run.
diff --git a/auxiliary_input/MOM_channel_list b/auxiliary_input/MOM_channel_list
new file mode 100644
index 0000000..40ca3de
--- /dev/null
+++ b/auxiliary_input/MOM_channel_list
@@ -0,0 +1,11 @@
+! This file specifies restricted channel widths in MOM. The order is:
+! [U|V]_width, min_longitude, max_longitude, min_latitude, max_latitude, width
+! This is a modified version of
+! https://raw.githubusercontent.com/NOAA-GFDL/MOM6-examples/4e9bf1c22f4d6f267389711715b68b3f3f53eea9/ocean_only/tides_025/INPUT/MOM_channels_global_025
+
+U_width, -5.8, -5.45, 35.5, 36.3, 8000.0 ! Gibraltar
+U_width, 26.3, 26.7, 40.4, 40.8, 5000.0 ! Dardanelles
+
+V_width, 28.6, 29.2, 41.0, 41.2, 1000.0 ! Bosporus - should be 1km wide.
+! V_width, 43.25, 43.5, 12.6, 12.8, 10000.0 ! Red Sea, Bab-el-Mendeb
+! V_width, 141.5, 141.7, 52.0, 52.15, 2500.0 ! Between Sakhalin & Russia
diff --git a/auxiliary_input/mask_table.1026.72x48 b/auxiliary_input/mask_table.1026.72x48
new file mode 100644
index 0000000..68fc996
--- /dev/null
+++ b/auxiliary_input/mask_table.1026.72x48
@@ -0,0 +1,1036 @@
+1026
+72, 48
+# Created by ml0072 (minghangli-uni) on 2026-09-10, using https://github.com/COSIMA/om3-scripts/blob/5f9e0ada98648805a0e707da2fae413b4c180920//masktable_generation/gen_masktable.py: /g/data/xp65/public/apps/med_conda_scripts/analysis3-25.11.d/bin/python3 ./om3-scripts/masktable_generation/gen_masktable.py -g ocean_hgrid.nc -t topog.nc -l 72 48 -m mom6 -a
+# /g/data/tm70/ml0072/COMMON/git_repos/make_om3_topo/ocean_hgrid.nc (md5 hash: 68cd47daf6d579da0aa57d2fd04f33da), /g/data/tm70/ml0072/COMMON/git_repos/make_om3_topo/topog.nc (md5 hash: cbb8c0ea00f8272dc448adbf9d942e4a)
+#
+# Grid size: 1440 x 1152
+# periodx: 360.0
+# periody: unset (aperiodic)
+# Target model: mom6
+# mom6 compatibility check: OK
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+2,43
+3,43
+4,43
+5,43
+6,43
+7,43
+8,43
+33,43
+34,43
+35,43
+36,43
+37,43
+38,43
+39,43
+40,43
+41,43
+42,43
+48,43
+49,43
+50,43
+51,43
+52,43
+69,43
+70,43
+71,43
+72,43
+1,44
+2,44
+3,44
+4,44
+5,44
+6,44
+33,44
+34,44
+35,44
+36,44
+37,44
+38,44
+39,44
+40,44
+41,44
+48,44
+49,44
+50,44
+51,44
+52,44
+69,44
+70,44
+71,44
+72,44
+1,45
+2,45
+3,45
+4,45
+5,45
+6,45
+7,45
+8,45
+33,45
+34,45
+35,45
+36,45
+37,45
+38,45
+39,45
+40,45
+47,45
+48,45
+49,45
+50,45
+51,45
+69,45
+70,45
+71,45
+72,45
+1,46
+2,46
+3,46
+4,46
+5,46
+6,46
+7,46
+33,46
+34,46
+35,46
+36,46
+37,46
+38,46
+39,46
+40,46
+69,46
+70,46
+71,46
+72,46
+1,47
+2,47
+3,47
+4,47
+33,47
+34,47
+35,47
+36,47
+37,47
+38,47
+39,47
+40,47
+69,47
+70,47
+71,47
+72,47
+1,48
+2,48
+3,48
+4,48
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+34,48
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diff --git a/config.yaml b/config.yaml
index b6ca288..e7c6259 100644
--- a/config.yaml
+++ b/config.yaml
@@ -1,66 +1,89 @@
-# PBS configuration
+# Payu configuration
# If submitting to a different project to your default, uncomment line below
# and change project code as appropriate; also set shortpath below
-# project: x77
-
+project: g40
# Force payu to always find, and save, files in this scratch project directory
-# (you may need to add the corresponding PBS -l storage flag in sync_data.sh)
-# shortpath: /scratch/v45
+shortpath: /scratch/x77
+
+# Using payu sync is recommend to copy data from ephemeral scratch space to
+# longer term storage
+sync:
+ enable: False # set path below and change to true
+ base_path: /g/data/ol01/outputs/access-om3-25km/ # Set to location on /g/data (e.g. /g/data/PROJECT/USER/)
+ restarts: True
+ exclude_uncollated: False
+
+#Model software version
+modules:
+ use:
+ - /g/data/vk83/modules
+ - /g/data/vk83/prerelease/modules
+ load:
+ - access-om3/pr264-25
+ - model-tools/mppnccombine-fast/2026.10.000-1
queue: normalsr
-ncpus: 1664
+ncpus: 2704
jobfs: 10GB
-mem: 8000GB
-
-walltime: 24:00:00
-jobname: 025km_jra55do_ryf
+mem: 13000GB
+walltime: 8:00:00
+jobname: 25km_jra_iaf_wombatlite
model: access-om3
-
exe: access-om3-MOM6-CICE6
input:
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/cice/grids/global.25km/2025.05.15/kmt.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/mosaic/global.25km/2025.05.15/ocean_hgrid.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/vertical/global.25km/2025.03.12/ocean_vgrid.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/initial_conditions/global.25km/2025.03.19/ocean_temp_salt.res.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/surface_salt_restoring/global.25km/2025.01.30/salt_sfc_restore.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2025.05.15/bottom_roughness.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2025.05.15/tideamp.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/grids/global.25km/2025.05.15/topog.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/global.25km/2025.05.15/access-om3-25km-ESMFmesh.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/global.25km/2025.05.15/access-om3-25km-nomask-ESMFmesh.nc
- - /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2024.09.16/JRA55do-datm-ESMFmesh.nc
- - /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2024.09.16/JRA55do-drof-ESMFmesh.nc
- - /g/data/vk83/prerelease/configurations/inputs/access-om3/cmeps/remap_weights/global.25km/2025.05.15/access-om3-25km-rof-remap-weights.nc
- - /g/data/vk83/experiments/inputs/JRA-55/RYF/v1-4/data
-
-runlog: false
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/cice/grids/global.25km/2026.08.17/kmt.nc
+ - /g/data/vk83/configurations/inputs/access-om3/share/grids/global.25km/2026.06.11/ocean_hgrid.nc
+ - /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.25km/2025.09.29/ocean_mosaic.nc
+ - /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/share/2024.05.08/grid_spec.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/grids/vertical/share/2025.03.12/ocean_vgrid.nc
+ - /g/data/vk83/configurations/inputs/access-om3/mom/initial_conditions/global.25km/2026.06.11/woa23_ts_01_mom.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/surface_salt_restoring/global.25km/2026.09.22/salt_sfc_restore.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2026.08.18/bottom_roughness.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2026.08.18/tideamp.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/grids/global.25km/2026.08.17/topog.nc
+ - /g/data/vk83/configurations/inputs/access-om3/mom/chlorophyll/global.25km/2026.06.11/chl_globcolour_monthly_clim.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/global.25km/2026.08.17/access-om3-25km-ESMFmesh.nc
+ - /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.25km/2026.06.11/access-om3-25km-nomask-ESMFmesh.nc
+ - /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-datm-ESMFmesh.nc
+ - /g/data/vk83/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-drof-ESMFmesh.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/cmeps/remap_weights/global.25km/2026.08.18/access-om3-25km-rof-remap-weights.nc
+ - /g/data/vk83/prerelease/configurations/inputs/access-om3/cmeps/rofi_pattern/global.25km/2026.08.18/access-om3-25km-rofi-climatology.nc
+ - /g/data/vk83/configurations/inputs/access-om3/wombat/forcing/global.25km/2026.06.11/SFe_Hamiltonetal2020_monthly_clim.nc
+ - /g/data/vk83/configurations/inputs/access-om3/wombat/forcing/global.25km/2026.06.11/CO2_gm_1750-2024.nc
+ - /g/data/vk83/configurations/inputs/access-om3/wombat/initial_conditions/share/2026.05.07/wombatlite_ic.nc
+ - /g/data/qv56/replicas/input4MIPs/CMIP6Plus/OMIP/MRI/MRI-JRA55-do-1-6-0/land/
+ - /g/data/qv56/replicas/input4MIPs/CMIP6Plus/OMIP/MRI/MRI-JRA55-do-1-6-0/landIce/
+ - /g/data/qv56/replicas/input4MIPs/CMIP6Plus/OMIP/MRI/MRI-JRA55-do-1-6-0/atmos/
+
+runlog: true
metadata:
- enable: false
+ enable: true
+manifest:
+ reproduce:
+ exe: True
+ input: True
-platform:
- nodesize: 104
- nodemem: 512
+mpi:
+ flags:
+ - --mca mpi_yield_when_idle true
collate:
- restart: true
+ restart: false
mpi: true
- walltime: 1:00:00
+ walltime: 6:00:00
mem: 30GB
ncpus: 4
- queue: normal
- exe: /g/data/vk83/apps/mppnccombine-fast/0.2/bin/mppnccombine-fast
+ queue: normalsr
+ exe: mppnccombine-fast
userscripts:
- setup: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/setup.sh
archive: /usr/bin/bash /g/data/vk83/apps/om3-scripts/payu_config/archive.sh
-modules:
- use:
- - /g/data/vk83/modules
- load:
- - access-om3/2025.05.001
- - nco/5.0.5
+postscript: -v PROJECT,SCRIPTS_DIR=/g/data/vk83/apps/om3-scripts -lstorage=${PBS_NCI_STORAGE}+gdata/xp65 /g/data/vk83/apps/om3-scripts/payu_config/postscript.sh
+
+qsub_flags: -W umask=027
-payu_minimum_version: 1.1.6
+restart_freq: 1YS
+payu_minimum_version: 1.3.6
diff --git a/data_table b/data_table
new file mode 100644
index 0000000..e8ac723
--- /dev/null
+++ b/data_table
@@ -0,0 +1,11 @@
+# MOM/FMS data table
+#
+# gridname | fieldname_code | fieldname_file | file_name | ongrid | factor
+# ----------------------------------------------------------------------------------------------------------------------------
+"OCN" , "co2_flux_pcair_atm" , "co2" , "./INPUT/CO2_gm_1750-2024.nc" , "none" , 1e-06
+"OCN" , "o2_flux_pcair_atm" , "" , "" , "none" , 0.21
+"OCN" , "dry_dep_fe_flux_ice_ocn", "SFe" , "./INPUT/SFe_Hamiltonetal2020_monthly_clim.nc", "none" , -1.0
+"OCN" , "runoff_no3_flux_ice_ocn", "" , "" , "none" , 0.1e-4
+"OCN" , "runoff_det_flux_ice_ocn", "" , "" , "none" , 0.1e-5
+"OCN" , "runoff_dic_flux_ice_ocn", "" , "" , "none" , 1.0e-3 # BLING: 0.96e-3
+"OCN" , "runoff_alk_flux_ice_ocn", "" , "" , "none" , 1.2e-3 # BLING: 0.5932e-3
diff --git a/datm.streams.xml b/datm.streams.xml
index 2fed090..39dd9b8 100644
--- a/datm.streams.xml
+++ b/datm.streams.xml
@@ -2,22 +2,88 @@
<file id="stream" version="2.0">
<metadata>
<File_type>DATM xml file provides forcing data</File_type>
- <date_generated>2024-09-16 13:44:43</date_generated>
- <history>Created by aek156 (Andrew Kiss) on 2024-09-16, using https://github.com/COSIMA/om3-scripts/blob/b4048fd0d3230112c9572d1ad5bb5120e7ddeee9/data_stream_xml_generation/generate_xml_datm.py: /g/data/vk83/apps/om3-scripts/data_stream_xml_generation/generate_xml_datm.py 1900 1900</history>
+ <date_generated>2026-05-22 14:32:52</date_generated>
+ <history>Created by as2285 (anton-seaice) on 2026-05-22, using https://github.com/ACCESS-NRI/om3-scripts/blob/7b4ae0dae754f25153da5651501a0359b1199d41//data_stream_xml_generation/generate_xml_datm_jra55.py: /g/data/vk83/apps/om3-scripts/data_stream_xml_generation/generate_xml_datm_jra55.py 1958 2024</history>
</metadata>
<stream_info name="JRA55do.PRSN">
- <taxmode>cycle</taxmode>
+ <taxmode>extend</taxmode>
+ <dtlimit>1.e30</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>consf</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.prsn.1990_1991.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010130-195812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010130-195912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010130-196012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010130-196112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010130-196212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010130-196312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010130-196412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010130-196512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010130-196612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010130-196712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010130-196812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010130-196912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010130-197012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010130-197112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010130-197212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010130-197312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010130-197412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010130-197512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010130-197612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010130-197712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010130-197812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010130-197912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010130-198012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010130-198112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010130-198212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010130-198312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010130-198412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010130-198512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010130-198612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010130-198712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010130-198812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010130-198912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010130-199012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010130-199112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010130-199212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010130-199312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010130-199412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010130-199512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010130-199612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010130-199712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010130-199812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010130-199912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010130-200012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010130-200112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010130-200212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010130-200312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010130-200412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010130-200512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010130-200612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010130-200712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010130-200812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010130-200912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010130-201012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010130-201112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010130-201212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010130-201312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010130-201412312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010130-201512312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010130-201612312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010130-201712312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010130-201812312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010130-201912312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010130-202012312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010130-202112312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010130-202212312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010130-202312312230.nc</file>
+ <file>./INPUT/3hr/prsn/gr/v20240531/prsn_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010130-202402012230.nc</file>
</datafiles>
<datavars>
<var>prsn Faxa_prsn</var>
@@ -26,18 +92,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.PRRN">
- <taxmode>cycle</taxmode>
+ <taxmode>extend</taxmode>
+ <dtlimit>1.e30</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>consf</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.prra.1990_1991.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010130-195812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010130-195912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010130-196012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010130-196112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010130-196212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010130-196312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010130-196412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010130-196512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010130-196612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010130-196712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010130-196812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010130-196912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010130-197012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010130-197112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010130-197212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010130-197312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010130-197412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010130-197512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010130-197612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010130-197712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010130-197812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010130-197912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010130-198012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010130-198112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010130-198212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010130-198312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010130-198412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010130-198512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010130-198612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010130-198712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010130-198812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010130-198912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010130-199012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010130-199112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010130-199212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010130-199312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010130-199412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010130-199512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010130-199612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010130-199712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010130-199812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010130-199912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010130-200012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010130-200112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010130-200212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010130-200312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010130-200412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010130-200512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010130-200612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010130-200712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010130-200812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010130-200912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010130-201012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010130-201112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010130-201212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010130-201312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010130-201412312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010130-201512312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010130-201612312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010130-201712312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010130-201812312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010130-201912312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010130-202012312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010130-202112312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010130-202212312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010130-202312312230.nc</file>
+ <file>./INPUT/3hr/prra/gr/v20240531/prra_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010130-202402012230.nc</file>
</datafiles>
<datavars>
<var>prra Faxa_prrn</var>
@@ -46,18 +178,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.LWDN">
- <taxmode>cycle</taxmode>
+ <taxmode>extend</taxmode>
+ <dtlimit>1.e30</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>consf</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.rlds.1990_1991.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010130-195812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010130-195912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010130-196012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010130-196112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010130-196212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010130-196312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010130-196412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010130-196512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010130-196612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010130-196712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010130-196812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010130-196912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010130-197012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010130-197112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010130-197212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010130-197312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010130-197412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010130-197512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010130-197612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010130-197712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010130-197812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010130-197912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010130-198012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010130-198112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010130-198212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010130-198312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010130-198412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010130-198512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010130-198612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010130-198712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010130-198812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010130-198912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010130-199012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010130-199112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010130-199212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010130-199312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010130-199412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010130-199512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010130-199612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010130-199712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010130-199812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010130-199912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010130-200012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010130-200112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010130-200212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010130-200312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010130-200412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010130-200512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010130-200612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010130-200712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010130-200812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010130-200912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010130-201012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010130-201112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010130-201212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010130-201312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010130-201412312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010130-201512312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010130-201612312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010130-201712312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010130-201812312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010130-201912312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010130-202012312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010130-202112312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010130-202212312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010130-202312312230.nc</file>
+ <file>./INPUT/3hr/rlds/gr/v20240531/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010130-202402012230.nc</file>
</datafiles>
<datavars>
<var>rlds Faxa_lwdn</var>
@@ -66,38 +264,170 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.SWDN">
- <taxmode>cycle</taxmode>
+ <taxmode>extend</taxmode>
+ <dtlimit>1.e30</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>consf</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.rsds.1990_1991.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010130-195812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010130-195912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010130-196012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010130-196112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010130-196212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010130-196312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010130-196412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010130-196512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010130-196612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010130-196712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010130-196812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010130-196912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010130-197012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010130-197112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010130-197212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010130-197312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010130-197412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010130-197512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010130-197612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010130-197712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010130-197812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010130-197912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010130-198012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010130-198112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010130-198212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010130-198312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010130-198412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010130-198512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010130-198612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010130-198712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010130-198812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010130-198912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010130-199012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010130-199112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010130-199212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010130-199312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010130-199412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010130-199512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010130-199612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010130-199712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010130-199812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010130-199912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010130-200012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010130-200112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010130-200212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010130-200312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010130-200412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010130-200512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010130-200612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010130-200712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010130-200812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010130-200912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010130-201012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010130-201112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010130-201212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010130-201312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010130-201412312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010130-201512312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010130-201612312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010130-201712312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010130-201812312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010130-201912312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010130-202012312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010130-202112312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010130-202212312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010130-202312312230.nc</file>
+ <file>./INPUT/3hr/rsds/gr/v20240531/rsds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010130-202402012230.nc</file>
</datafiles>
<datavars>
<var>rsds Faxa_swdn</var>
</datavars>
- <offset>0</offset>
+ <offset>-5400</offset>
<tintalgo>coszen</tintalgo>
</stream_info>
<stream_info name="JRA55do.Q_10">
- <taxmode>cycle</taxmode>
+ <taxmode>limit</taxmode>
+ <dtlimit>1.0</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>patch</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.huss.1990_1991.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010000-195812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010000-195912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010000-196012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010000-196112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010000-196212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010000-196312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010000-196412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010000-196512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010000-196612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010000-196712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010000-196812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010000-196912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010000-197012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010000-197112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010000-197212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010000-197312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010000-197412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010000-197512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010000-197612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010000-197712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010000-197812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010000-197912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010000-198012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010000-198112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010000-198212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010000-198312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010000-198412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010000-198512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010000-198612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010000-198712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010000-198812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010000-198912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010000-199012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010000-199112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010000-199212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010000-199312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010000-199412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010000-199512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010000-199612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010000-199712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010000-199812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010000-199912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010000-200012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010000-200112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010000-200212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010000-200312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010000-200412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010000-200512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010000-200612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010000-200712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010000-200812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010000-200912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010000-201012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010000-201112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010000-201212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010000-201312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010000-201412312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010000-201512312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010000-201612312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010000-201712312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010000-201812312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010000-201912312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010000-202012312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010000-202112312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010000-202212312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010000-202312312100.nc</file>
+ <file>./INPUT/3hrPt/huss/gr/v20240531/huss_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010000-202402012100.nc</file>
</datafiles>
<datavars>
<var>huss Sa_shum</var>
@@ -106,18 +436,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.SLP_10">
- <taxmode>cycle</taxmode>
+ <taxmode>limit</taxmode>
+ <dtlimit>1.0</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>patch</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.psl.1990_1991.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010000-195812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010000-195912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010000-196012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010000-196112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010000-196212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010000-196312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010000-196412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010000-196512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010000-196612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010000-196712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010000-196812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010000-196912312100.nc</file>
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+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010000-197112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010000-197212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010000-197312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010000-197412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010000-197512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010000-197612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010000-197712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010000-197812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010000-197912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010000-198012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010000-198112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010000-198212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010000-198312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010000-198412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010000-198512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010000-198612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010000-198712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010000-198812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010000-198912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010000-199012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010000-199112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010000-199212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010000-199312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010000-199412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010000-199512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010000-199612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010000-199712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010000-199812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010000-199912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010000-200012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010000-200112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010000-200212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010000-200312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010000-200412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010000-200512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010000-200612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010000-200712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010000-200812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010000-200912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010000-201012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010000-201112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010000-201212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010000-201312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010000-201412312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010000-201512312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010000-201612312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010000-201712312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010000-201812312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010000-201912312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010000-202012312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010000-202112312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010000-202212312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010000-202312312100.nc</file>
+ <file>./INPUT/3hrPt/psl/gr/v20240531/psl_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010000-202402012100.nc</file>
</datafiles>
<datavars>
<var>psl Sa_pslv</var>
@@ -126,18 +522,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.T_10">
- <taxmode>cycle</taxmode>
+ <taxmode>limit</taxmode>
+ <dtlimit>1.0</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>patch</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.tas.1990_1991.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010000-195812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010000-195912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010000-196012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010000-196112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010000-196212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010000-196312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010000-196412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010000-196512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010000-196612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010000-196712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010000-196812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010000-196912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010000-197012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010000-197112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010000-197212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010000-197312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010000-197412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010000-197512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010000-197612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010000-197712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010000-197812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010000-197912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010000-198012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010000-198112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010000-198212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010000-198312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010000-198412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010000-198512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010000-198612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010000-198712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010000-198812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010000-198912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010000-199012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010000-199112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010000-199212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010000-199312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010000-199412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010000-199512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010000-199612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010000-199712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010000-199812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010000-199912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010000-200012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010000-200112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010000-200212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010000-200312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010000-200412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010000-200512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010000-200612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010000-200712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010000-200812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010000-200912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010000-201012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010000-201112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010000-201212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010000-201312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010000-201412312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010000-201512312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010000-201612312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010000-201712312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010000-201812312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010000-201912312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010000-202012312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010000-202112312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010000-202212312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010000-202312312100.nc</file>
+ <file>./INPUT/3hrPt/tas/gr/v20240531/tas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010000-202402012100.nc</file>
</datafiles>
<datavars>
<var>tas Sa_tbot</var>
@@ -146,18 +608,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.U_10">
- <taxmode>cycle</taxmode>
+ <taxmode>limit</taxmode>
+ <dtlimit>1.0</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>patch</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.uas.1990_1991.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010000-195812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010000-195912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010000-196012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010000-196112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010000-196212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010000-196312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010000-196412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010000-196512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010000-196612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010000-196712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010000-196812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010000-196912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010000-197012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010000-197112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010000-197212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010000-197312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010000-197412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010000-197512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010000-197612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197701010000-197712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197801010000-197812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197901010000-197912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198001010000-198012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198101010000-198112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198201010000-198212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198301010000-198312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198401010000-198412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198501010000-198512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198601010000-198612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198701010000-198712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198801010000-198812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_198901010000-198912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199001010000-199012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199101010000-199112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199201010000-199212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199301010000-199312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199401010000-199412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199501010000-199512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199601010000-199612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199701010000-199712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199801010000-199812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_199901010000-199912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200001010000-200012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200101010000-200112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200201010000-200212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200301010000-200312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200401010000-200412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200501010000-200512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200601010000-200612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200701010000-200712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200801010000-200812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_200901010000-200912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201001010000-201012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201101010000-201112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201201010000-201212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201301010000-201312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201401010000-201412312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201501010000-201512312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201601010000-201612312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201701010000-201712312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201801010000-201812312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_201901010000-201912312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202001010000-202012312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202101010000-202112312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202201010000-202212312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202301010000-202312312100.nc</file>
+ <file>./INPUT/3hrPt/uas/gr/v20240531/uas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_202401010000-202402012100.nc</file>
</datafiles>
<datavars>
<var>uas Sa_u</var>
@@ -166,18 +694,84 @@
<tintalgo>linear</tintalgo>
</stream_info>
<stream_info name="JRA55do.V_10">
- <taxmode>cycle</taxmode>
+ <taxmode>limit</taxmode>
+ <dtlimit>1.0</dtlimit>
<readmode>single</readmode>
- <mapalgo>bilinear</mapalgo>
- <dtlimit>1.5</dtlimit>
- <year_first>1900</year_first>
- <year_last>1900</year_last>
- <year_align>1900</year_align>
+ <mapalgo>patch</mapalgo>
+ <year_first>1958</year_first>
+ <year_last>2024</year_last>
+ <year_align>1958</year_align>
<vectors>null</vectors>
<meshfile>./INPUT/JRA55do-datm-ESMFmesh.nc</meshfile>
<lev_dimname>null</lev_dimname>
<datafiles>
- <file>./INPUT/RYF.vas.1990_1991.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195801010000-195812312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_195901010000-195912312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196001010000-196012312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196101010000-196112312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196201010000-196212312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196301010000-196312312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196401010000-196412312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196501010000-196512312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196601010000-196612312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196701010000-196712312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196801010000-196812312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_196901010000-196912312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197001010000-197012312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197101010000-197112312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197201010000-197212312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197301010000-197312312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197401010000-197412312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197501010000-197512312100.nc</file>
+ <file>./INPUT/3hrPt/vas/gr/v20240531/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-6-0_gr_197601010000-197612312100.nc</file>
... (10174 more lines)
Check this on Gadi: the closest shared commit and tag
# WHAT THIS DOES: checks the 'Where are my friends?' section. It makes a temporary copy of access-
# om3-configs (the repository of released configurations), adds this run's history to it, and asks
# git which commits the two share. The newest shared commit is the run's closest 'friend'; git
# describe then names the nearest tag before it.
R=/home/156/aek156/payu/MC_25km_jra_iaf+wombatlite
# Step 1: a temporary copy of access-om3-configs (about 30 MB; deleted at the end)
T=$(mktemp -d)
git clone -q --bare https://github.com/ACCESS-NRI/access-om3-configs.git "$T/configs.git"
# Step 2: add this run's history to the copy (nothing is changed in the run's own folder)
git -c safe.directory='*' --git-dir="$T/configs.git" fetch -q "$R" +HEAD:refs/runs/this
# Step 3: the commits this run shares with any branch or tag (the lines starting with '-'), newest first
git --git-dir="$T/configs.git" rev-list --boundary refs/runs/this --not --branches --tags | grep '^-' \
| cut -c2- | xargs -r git --git-dir="$T/configs.git" log --no-walk --format='%h %cI %s'
# Step 4: which branches contain the newest shared commit, and the nearest tag before it
S=73f3acc
git --git-dir="$T/configs.git" branch --contains "$S"
git --git-dir="$T/configs.git" describe --tags --abbrev=0 "$S"
rm -rf "$T" # remove the temporary copy